| Motif | AHCTF1.H13INVIVO.0.B.D |
| Gene (human) | AHCTF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Ahctf1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | AHCTF1.H13INVIVO.0.B.D |
| Gene (human) | AHCTF1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Ahctf1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 7 |
| Consensus | nhAAATd |
| GC content | 12.8% |
| Information content (bits; total / per base) | 8.486 / 1.212 |
| Data sources | PBM |
| Aligned words | 681 |
| Previous names |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.937 | 0.121 | 0.904 | 0.132 |
| best | 0.951 | 0.173 | 0.913 | 0.155 | |
| TF superclass | beta-Sheet binding to DNA {8} (TFClass) |
| TF class | A.T hook factors {8.2} (TFClass) |
| TF family | Unannotated {8.2.255} (TFClass) |
| TF subfamily | {8.2.255.0} (TFClass) |
| TFClass ID | TFClass: 8.2.255.0.1 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | ELYS_HUMAN |
| UniProt ID (mouse) | ELYS_MOUSE |
| UniProt AC (human) | Q8WYP5 (TFClass) |
| UniProt AC (mouse) | Q8CJF7 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 4 |
| PCM | AHCTF1.H13INVIVO.0.B.D.pcm |
| PWM | AHCTF1.H13INVIVO.0.B.D.pwm |
| PFM | AHCTF1.H13INVIVO.0.B.D.pfm |
| Threshold to P-value map | AHCTF1.H13INVIVO.0.B.D.thr |
| Motif in other formats | |
| JASPAR format | AHCTF1.H13INVIVO.0.B.D_jaspar_format.txt |
| MEME format | AHCTF1.H13INVIVO.0.B.D_meme_format.meme |
| Transfac format | AHCTF1.H13INVIVO.0.B.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 250.0 | 118.0 | 145.0 | 168.0 |
| 02 | 332.0 | 76.0 | 67.0 | 206.0 |
| 03 | 681.0 | 0.0 | 0.0 | 0.0 |
| 04 | 681.0 | 0.0 | 0.0 | 0.0 |
| 05 | 681.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 681.0 |
| 07 | 281.0 | 91.0 | 113.0 | 196.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.367 | 0.173 | 0.213 | 0.247 |
| 02 | 0.488 | 0.112 | 0.098 | 0.302 |
| 03 | 1.0 | 0.0 | 0.0 | 0.0 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.413 | 0.134 | 0.166 | 0.288 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.381 | -0.362 | -0.159 | -0.013 |
| 02 | 0.663 | -0.795 | -0.918 | 0.189 |
| 03 | 1.379 | -4.658 | -4.658 | -4.658 |
| 04 | 1.379 | -4.658 | -4.658 | -4.658 |
| 05 | 1.379 | -4.658 | -4.658 | -4.658 |
| 06 | -4.658 | -4.658 | -4.658 | 1.379 |
| 07 | 0.497 | -0.618 | -0.405 | 0.14 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.731585 |
| 0.0005 | 6.178785 |
| 0.0001 | 6.702365 |