ARNT.H13INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ARNT.H13INVIVO.0.P.B
Gene (human)	ARNT (GeneCards)
Gene synonyms (human)	BHLHE2
Gene (mouse)	Arnt
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	9
Consensus	vdACGTGMb
GC content	60.49%
Information content (bits; total / per base)	10.102 / 1.122
Data sources	ChIP-Seq
Aligned words	1000
Previous names	ARNT.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	10 (58)	0.842	0.912	0.764	0.833	0.796	0.862	2.612	3.142	162.241	343.796

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	8.97	7.987	0.169	0.066

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	PAS {1.2.5} (TFClass)
TF subfamily	PAS-ARNT {1.2.5.2} (TFClass)
TFClass ID	TFClass: 1.2.5.2.1
HGNC	HGNC:700
MGI	MGI:88071
EntrezGene (human)	GeneID:405 (SSTAR profile)
EntrezGene (mouse)	GeneID:11863 (SSTAR profile)
UniProt ID (human)	ARNT_HUMAN
UniProt ID (mouse)	ARNT_MOUSE
UniProt AC (human)	P27540 (TFClass)
UniProt AC (mouse)	P53762 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	10 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ARNT.H13INVIVO.0.P.B.pcm
PWM	ARNT.H13INVIVO.0.P.B.pwm
PFM	ARNT.H13INVIVO.0.P.B.pfm
Threshold to P-value map	ARNT.H13INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ARNT.H13INVIVO.0.P.B_jaspar_format.txt
MEME format	ARNT.H13INVIVO.0.P.B_meme_format.meme
Transfac format	ARNT.H13INVIVO.0.P.B_transfac_format.txt
Homer format	ARNT.H13INVIVO.0.P.B_homer_format_0.001.txt ARNT.H13INVIVO.0.P.B_homer_format_0.0005.txt ARNT.H13INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	201.0	263.0	481.0	55.0
02	129.0	67.0	271.0	533.0
03	824.0	14.0	159.0	3.0
04	3.0	973.0	2.0	22.0
05	11.0	4.0	985.0	0.0
06	1.0	0.0	1.0	998.0
07	0.0	0.0	999.0	1.0
08	322.0	538.0	55.0	85.0
09	167.0	430.0	202.0	201.0

PFM

	A	C	G	T
01	0.201	0.263	0.481	0.055
02	0.129	0.067	0.271	0.533
03	0.824	0.014	0.159	0.003
04	0.003	0.973	0.002	0.022
05	0.011	0.004	0.985	0.0
06	0.001	0.0	0.001	0.998
07	0.0	0.0	0.999	0.001
08	0.322	0.538	0.055	0.085
09	0.167	0.43	0.202	0.201

PWM

	A	C	G	T
01	-0.216	0.05	0.651	-1.49
02	-0.655	-1.298	0.08	0.753
03	1.188	-2.773	-0.449	-3.975
04	-3.975	1.354	-4.213	-2.362
05	-2.985	-3.783	1.366	-4.982
06	-4.525	-4.982	-4.525	1.379
07	-4.982	-4.982	1.38	-4.525
08	0.252	0.763	-1.49	-1.066
09	-0.4	0.539	-0.212	-0.216

Standard thresholds

P-value	Threshold
0.001	4.86737
0.0005	5.992255
0.0001	7.586725