ARNT2.H13INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ARNT2.H13INVIVO.0.P.B
Gene (human)	ARNT2 (GeneCards)
Gene synonyms (human)	BHLHE1, KIAA0307
Gene (mouse)	Arnt2
Gene synonyms (mouse)	Kiaa0307
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	13
Consensus	dCGTGMbhdSvvd
GC content	55.32%
Information content (bits; total / per base)	8.722 / 0.671
Data sources	ChIP-Seq
Aligned words	989
Previous names	ARNT2.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	13 (90)	0.778	0.829	0.645	0.698	0.697	0.755	1.843	2.18	79.58	147.509

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.955	0.925	0.915	0.882	0.802	0.787
Non-Methyl HT-SELEX, 1 experiments	best	0.955	0.925	0.915	0.882	0.802	0.787

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	PAS {1.2.5} (TFClass)
TF subfamily	PAS-ARNT {1.2.5.2} (TFClass)
TFClass ID	TFClass: 1.2.5.2.2
HGNC	HGNC:16876
MGI	MGI:107188
EntrezGene (human)	GeneID:9915 (SSTAR profile)
EntrezGene (mouse)	GeneID:11864 (SSTAR profile)
UniProt ID (human)	ARNT2_HUMAN
UniProt ID (mouse)	ARNT2_MOUSE
UniProt AC (human)	Q9HBZ2 (TFClass)
UniProt AC (mouse)	Q61324 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 13 mouse
HT-SELEX	1
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ARNT2.H13INVIVO.0.P.B.pcm
PWM	ARNT2.H13INVIVO.0.P.B.pwm
PFM	ARNT2.H13INVIVO.0.P.B.pfm
Threshold to P-value map	ARNT2.H13INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ARNT2.H13INVIVO.0.P.B_jaspar_format.txt
MEME format	ARNT2.H13INVIVO.0.P.B_meme_format.meme
Transfac format	ARNT2.H13INVIVO.0.P.B_transfac_format.txt
Homer format	ARNT2.H13INVIVO.0.P.B_homer_format_0.001.txt ARNT2.H13INVIVO.0.P.B_homer_format_0.0005.txt ARNT2.H13INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	439.0	93.0	217.0	240.0
02	14.0	738.0	19.0	218.0
03	33.0	46.0	898.0	12.0
04	1.0	4.0	7.0	977.0
05	1.0	3.0	979.0	6.0
06	426.0	451.0	43.0	69.0
07	94.0	518.0	117.0	260.0
08	129.0	272.0	98.0	490.0
09	200.0	101.0	348.0	340.0
10	59.0	212.0	606.0	112.0
11	329.0	378.0	219.0	63.0
12	461.0	219.0	160.0	149.0
13	142.0	124.0	243.0	480.0

PFM

	A	C	G	T
01	0.444	0.094	0.219	0.243
02	0.014	0.746	0.019	0.22
03	0.033	0.047	0.908	0.012
04	0.001	0.004	0.007	0.988
05	0.001	0.003	0.99	0.006
06	0.431	0.456	0.043	0.07
07	0.095	0.524	0.118	0.263
08	0.13	0.275	0.099	0.495
09	0.202	0.102	0.352	0.344
10	0.06	0.214	0.613	0.113
11	0.333	0.382	0.221	0.064
12	0.466	0.221	0.162	0.151
13	0.144	0.125	0.246	0.485

PWM

	A	C	G	T
01	0.571	-0.966	-0.13	-0.03
02	-2.762	1.089	-2.486	-0.125
03	-1.97	-1.652	1.285	-2.898
04	-4.515	-3.773	-3.351	1.369
05	-4.515	-3.965	1.371	-3.473
06	0.541	0.598	-1.717	-1.259
07	-0.956	0.736	-0.741	0.05
08	-0.644	0.095	-0.915	0.681
09	-0.21	-0.885	0.34	0.317
10	-1.411	-0.153	0.892	-0.784
11	0.284	0.422	-0.12	-1.347
12	0.62	-0.12	-0.431	-0.502
13	-0.549	-0.683	-0.017	0.66

Standard thresholds

P-value	Threshold
0.001	5.11376
0.0005	5.84691
0.0001	7.217815