ARNT2.H13INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ARNT2.H13INVIVO.1.P.B
Gene (human)	ARNT2 (GeneCards)
Gene synonyms (human)	BHLHE1, KIAA0307
Gene (mouse)	Arnt2
Gene synonyms (mouse)	Kiaa0307
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	11
Consensus	vvdWCGTGMbb
GC content	61.78%
Information content (bits; total / per base)	10.167 / 0.924
Data sources	ChIP-Seq
Aligned words	1011
Previous names	ARNT2.H12INVIVO.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	13 (90)	0.809	0.927	0.702	0.849	0.707	0.882	1.92	2.874	137.817	337.027

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.893	0.802	0.899	0.822	0.817	0.772
Non-Methyl HT-SELEX, 1 experiments	best	0.893	0.802	0.899	0.822	0.817	0.772

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	PAS {1.2.5} (TFClass)
TF subfamily	PAS-ARNT {1.2.5.2} (TFClass)
TFClass ID	TFClass: 1.2.5.2.2
HGNC	HGNC:16876
MGI	MGI:107188
EntrezGene (human)	GeneID:9915 (SSTAR profile)
EntrezGene (mouse)	GeneID:11864 (SSTAR profile)
UniProt ID (human)	ARNT2_HUMAN
UniProt ID (mouse)	ARNT2_MOUSE
UniProt AC (human)	Q9HBZ2 (TFClass)
UniProt AC (mouse)	Q61324 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 13 mouse
HT-SELEX	1
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ARNT2.H13INVIVO.1.P.B.pcm
PWM	ARNT2.H13INVIVO.1.P.B.pwm
PFM	ARNT2.H13INVIVO.1.P.B.pfm
Threshold to P-value map	ARNT2.H13INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ARNT2.H13INVIVO.1.P.B_jaspar_format.txt
MEME format	ARNT2.H13INVIVO.1.P.B_meme_format.meme
Transfac format	ARNT2.H13INVIVO.1.P.B_transfac_format.txt
Homer format	ARNT2.H13INVIVO.1.P.B_homer_format_0.001.txt ARNT2.H13INVIVO.1.P.B_homer_format_0.0005.txt ARNT2.H13INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	226.0	246.0	432.0	107.0
02	254.0	185.0	486.0	86.0
03	178.0	96.0	494.0	243.0
04	482.0	4.0	101.0	424.0
05	1.0	998.0	2.0	10.0
06	2.0	7.0	1002.0	0.0
07	1.0	0.0	0.0	1010.0
08	0.0	0.0	1010.0	1.0
09	398.0	533.0	22.0	58.0
10	41.0	540.0	183.0	247.0
11	101.0	312.0	218.0	380.0

PFM

	A	C	G	T
01	0.224	0.243	0.427	0.106
02	0.251	0.183	0.481	0.085
03	0.176	0.095	0.489	0.24
04	0.477	0.004	0.1	0.419
05	0.001	0.987	0.002	0.01
06	0.002	0.007	0.991	0.0
07	0.001	0.0	0.0	0.999
08	0.0	0.0	0.999	0.001
09	0.394	0.527	0.022	0.057
10	0.041	0.534	0.181	0.244
11	0.1	0.309	0.216	0.376

PWM

	A	C	G	T
01	-0.111	-0.027	0.533	-0.85
02	0.005	-0.31	0.651	-1.065
03	-0.348	-0.957	0.667	-0.039
04	0.642	-3.794	-0.907	0.515
05	-4.535	1.368	-4.223	-3.077
06	-4.223	-3.372	1.372	-4.991
07	-4.535	-4.991	-4.991	1.38
08	-4.991	-4.991	1.38	-4.535
09	0.452	0.743	-2.372	-1.449
10	-1.784	0.756	-0.32	-0.023
11	-0.907	0.209	-0.147	0.405

Standard thresholds

P-value	Threshold
0.001	4.96373
0.0005	6.06675
0.0001	7.599915