ATF1.H13INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ATF1.H13INVITRO.1.P.D
Gene (human)	ATF1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Atf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	19
Consensus	SCSMbbnvhdRTGACGYMv
GC content	59.52%
Information content (bits; total / per base)	13.879 / 0.73
Data sources	ChIP-Seq
Aligned words	113
Previous names	ATF1.H12INVITRO.1.P.D

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (32)	0.882	0.954	0.83	0.929	0.816	0.936	4.17	6.073	245.358	420.119

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	18.056	3.98	0.183	0.103

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	CREB-related {1.1.7} (TFClass)
TF subfamily	CREB-like {1.1.7.1} (TFClass)
TFClass ID	TFClass: 1.1.7.1.2
HGNC	HGNC:783
MGI	MGI:1298366
EntrezGene (human)	GeneID:466 (SSTAR profile)
EntrezGene (mouse)	GeneID:11908 (SSTAR profile)
UniProt ID (human)	ATF1_HUMAN
UniProt ID (mouse)	ATF1_MOUSE
UniProt AC (human)	P18846 (TFClass)
UniProt AC (mouse)	P81269 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ATF1.H13INVITRO.1.P.D.pcm
PWM	ATF1.H13INVITRO.1.P.D.pwm
PFM	ATF1.H13INVITRO.1.P.D.pfm
Threshold to P-value map	ATF1.H13INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ATF1.H13INVITRO.1.P.D_jaspar_format.txt
MEME format	ATF1.H13INVITRO.1.P.D_meme_format.meme
Transfac format	ATF1.H13INVITRO.1.P.D_transfac_format.txt
Homer format	ATF1.H13INVITRO.1.P.D_homer_format_0.001.txt ATF1.H13INVITRO.1.P.D_homer_format_0.0005.txt ATF1.H13INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2.0	16.0	82.0	13.0
02	3.0	92.0	10.0	8.0
03	3.0	17.0	84.0	9.0
04	15.0	83.0	7.0	8.0
05	19.0	29.0	45.0	20.0
06	12.0	48.0	30.0	23.0
07	30.0	29.0	27.0	27.0
08	15.0	46.0	38.0	14.0
09	22.0	30.0	5.0	56.0
10	22.0	17.0	48.0	26.0
11	70.0	9.0	25.0	9.0
12	3.0	8.0	5.0	97.0
13	5.0	0.0	93.0	15.0
14	102.0	2.0	7.0	2.0
15	2.0	107.0	1.0	3.0
16	4.0	3.0	105.0	1.0
17	5.0	28.0	0.0	80.0
18	38.0	65.0	7.0	3.0
19	73.0	15.0	15.0	10.0

PFM

	A	C	G	T
01	0.018	0.142	0.726	0.115
02	0.027	0.814	0.088	0.071
03	0.027	0.15	0.743	0.08
04	0.133	0.735	0.062	0.071
05	0.168	0.257	0.398	0.177
06	0.106	0.425	0.265	0.204
07	0.265	0.257	0.239	0.239
08	0.133	0.407	0.336	0.124
09	0.195	0.265	0.044	0.496
10	0.195	0.15	0.425	0.23
11	0.619	0.08	0.221	0.08
12	0.027	0.071	0.044	0.858
13	0.044	0.0	0.823	0.133
14	0.903	0.018	0.062	0.018
15	0.018	0.947	0.009	0.027
16	0.035	0.027	0.929	0.009
17	0.044	0.248	0.0	0.708
18	0.336	0.575	0.062	0.027
19	0.646	0.133	0.133	0.088

PWM

	A	C	G	T
01	-2.225	-0.538	1.039	-0.73
02	-1.951	1.152	-0.968	-1.165
03	-1.951	-0.482	1.063	-1.061
04	-0.598	1.051	-1.28	-1.165
05	-0.377	0.025	0.451	-0.329
06	-0.803	0.513	0.058	-0.196
07	0.058	0.025	-0.043	-0.043
08	-0.598	0.472	0.286	-0.662
09	-0.239	0.058	-1.56	0.664
10	-0.239	-0.482	0.513	-0.08
11	0.883	-1.061	-0.117	-1.061
12	-1.951	-1.165	-1.56	1.205
13	-1.56	-3.215	1.163	-0.598
14	1.254	-2.225	-1.28	-2.225
15	-2.225	1.302	-2.602	-1.951
16	-1.737	-1.951	1.283	-2.602
17	-1.56	-0.009	-3.215	1.015
18	0.286	0.81	-1.28	-1.951
19	0.924	-0.598	-0.598	-0.968

Standard thresholds

P-value	Threshold
0.001	4.04441
0.0005	4.97596
0.0001	6.94436