ATF7.H13INVIVO.0.PSM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ATF7.H13INVIVO.0.PSM.A
Gene (human)	ATF7 (GeneCards)
Gene synonyms (human)	ATFA
Gene (mouse)	Atf7
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	RATGACGTCAY
GC content	44.71%
Information content (bits; total / per base)	16.993 / 1.545
Data sources	ChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words	971
Previous names	ATF7.H12INVIVO.0.PSM.A

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (28)	0.851	0.992	0.834	0.986	0.841	0.999	4.959	7.853	501.631	1187.284
Mouse	1 (5)	0.783	0.833	0.722	0.787	0.773	0.82	3.158	3.473	122.18	219.921

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 3 experiments	median	0.757	0.771	0.625	0.641	0.576	0.582
Overall, 3 experiments	best	0.996	0.993	0.985	0.98	0.92	0.913
Methyl HT-SELEX, 1 experiments	median	0.714	0.697	0.625	0.617	0.576	0.575
Methyl HT-SELEX, 1 experiments	best	0.714	0.697	0.625	0.617	0.576	0.575
Non-Methyl HT-SELEX, 2 experiments	median	0.876	0.882	0.802	0.811	0.74	0.748
Non-Methyl HT-SELEX, 2 experiments	best	0.996	0.993	0.985	0.98	0.92	0.913

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	ATF2 {1.1.1.3} (TFClass)
TFClass ID	TFClass: 1.1.1.3.2
HGNC	HGNC:792
MGI	MGI:2443472
EntrezGene (human)	GeneID:11016 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ATF7_HUMAN
UniProt ID (mouse)	ATF7_MOUSE
UniProt AC (human)	P17544 (TFClass)
UniProt AC (mouse)	Q8R0S1 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ATF7.H13INVIVO.0.PSM.A.pcm
PWM	ATF7.H13INVIVO.0.PSM.A.pwm
PFM	ATF7.H13INVIVO.0.PSM.A.pfm
Threshold to P-value map	ATF7.H13INVIVO.0.PSM.A.thr
Motif in other formats
JASPAR format	ATF7.H13INVIVO.0.PSM.A_jaspar_format.txt
MEME format	ATF7.H13INVIVO.0.PSM.A_meme_format.meme
Transfac format	ATF7.H13INVIVO.0.PSM.A_transfac_format.txt
Homer format	ATF7.H13INVIVO.0.PSM.A_homer_format_0.001.txt ATF7.H13INVIVO.0.PSM.A_homer_format_0.0005.txt ATF7.H13INVIVO.0.PSM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	291.0	61.0	576.0	43.0
02	762.0	1.0	206.0	2.0
03	0.0	1.0	0.0	970.0
04	0.0	0.0	965.0	6.0
05	967.0	0.0	4.0	0.0
06	1.0	785.0	9.0	176.0
07	1.0	1.0	966.0	3.0
08	22.0	9.0	0.0	940.0
09	98.0	871.0	2.0	0.0
10	970.0	1.0	0.0	0.0
11	2.0	263.0	55.0	651.0

PFM

	A	C	G	T
01	0.3	0.063	0.593	0.044
02	0.785	0.001	0.212	0.002
03	0.0	0.001	0.0	0.999
04	0.0	0.0	0.994	0.006
05	0.996	0.0	0.004	0.0
06	0.001	0.808	0.009	0.181
07	0.001	0.001	0.995	0.003
08	0.023	0.009	0.0	0.968
09	0.101	0.897	0.002	0.0
10	0.999	0.001	0.0	0.0
11	0.002	0.271	0.057	0.67

PWM

	A	C	G	T
01	0.18	-1.36	0.86	-1.699
02	1.139	-4.499	-0.163	-4.185
03	-4.957	-4.499	-4.957	1.38
04	-4.957	-4.957	1.375	-3.455
05	1.377	-4.957	-3.755	-4.957
06	-4.499	1.169	-3.127	-0.319
07	-4.499	-4.499	1.376	-3.947
08	-2.333	-3.127	-4.957	1.349
09	-0.897	1.273	-4.185	-4.957
10	1.38	-4.499	-4.957	-4.957
11	-4.185	0.08	-1.461	0.982

Standard thresholds

P-value	Threshold
0.001	0.38699
0.0005	1.92084
0.0001	5.350595