ATMIN.H13RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ATMIN.H13RSNP.0.P.D
Gene (human)	ATMIN (GeneCards)
Gene synonyms (human)
Gene (mouse)	Atmin
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	vvvRRARRvdSMRRvvGRRRv
GC content	65.35%
Information content (bits; total / per base)	12.451 / 0.593
Data sources	ChIP-Seq
Aligned words	1000
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.742	0.745	0.561	0.565	0.701	0.726	16.409	16.699

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.257
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	ATMIN_HUMAN
UniProt ID (mouse)	ATMIN_MOUSE
UniProt AC (human)	O43313 (TFClass)
UniProt AC (mouse)	Q6P9S1 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	ATMIN.H13RSNP.0.P.D.pcm
PWM	ATMIN.H13RSNP.0.P.D.pwm
PFM	ATMIN.H13RSNP.0.P.D.pfm
Threshold to P-value map	ATMIN.H13RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ATMIN.H13RSNP.0.P.D_jaspar_format.txt
MEME format	ATMIN.H13RSNP.0.P.D_meme_format.meme
Transfac format	ATMIN.H13RSNP.0.P.D_transfac_format.txt
Homer format	ATMIN.H13RSNP.0.P.D_homer_format_0.001.txt ATMIN.H13RSNP.0.P.D_homer_format_0.0005.txt ATMIN.H13RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	181.0	173.0	580.0	66.0
02	184.0	260.0	503.0	53.0
03	308.0	194.0	443.0	55.0
04	248.0	32.0	710.0	10.0
05	276.0	93.0	585.0	46.0
06	826.0	82.0	48.0	44.0
07	286.0	35.0	664.0	15.0
08	402.0	82.0	496.0	20.0
09	419.0	150.0	332.0	99.0
10	235.0	138.0	472.0	155.0
11	38.0	294.0	656.0	12.0
12	113.0	760.0	84.0	43.0
13	233.0	53.0	595.0	119.0
14	127.0	74.0	783.0	16.0
15	299.0	238.0	440.0	23.0
16	220.0	210.0	484.0	86.0
17	128.0	53.0	793.0	26.0
18	306.0	189.0	500.0	5.0
19	749.0	26.0	199.0	26.0
20	359.0	74.0	557.0	10.0
21	362.0	114.0	476.0	48.0

PFM

	A	C	G	T
01	0.181	0.173	0.58	0.066
02	0.184	0.26	0.503	0.053
03	0.308	0.194	0.443	0.055
04	0.248	0.032	0.71	0.01
05	0.276	0.093	0.585	0.046
06	0.826	0.082	0.048	0.044
07	0.286	0.035	0.664	0.015
08	0.402	0.082	0.496	0.02
09	0.419	0.15	0.332	0.099
10	0.235	0.138	0.472	0.155
11	0.038	0.294	0.656	0.012
12	0.113	0.76	0.084	0.043
13	0.233	0.053	0.595	0.119
14	0.127	0.074	0.783	0.016
15	0.299	0.238	0.44	0.023
16	0.22	0.21	0.484	0.086
17	0.128	0.053	0.793	0.026
18	0.306	0.189	0.5	0.005
19	0.749	0.026	0.199	0.026
20	0.359	0.074	0.557	0.01
21	0.362	0.114	0.476	0.048

PWM

	A	C	G	T
01	-0.32	-0.365	0.838	-1.313
02	-0.304	0.039	0.696	-1.526
03	0.207	-0.252	0.569	-1.49
04	-0.008	-2.01	1.039	-3.066
05	0.098	-0.977	0.846	-1.663
06	1.19	-1.101	-1.622	-1.706
07	0.134	-1.925	0.973	-2.711
08	0.472	-1.101	0.682	-2.45
09	0.514	-0.506	0.282	-0.916
10	-0.061	-0.589	0.632	-0.474
11	-1.846	0.161	0.96	-2.909
12	-0.786	1.107	-1.077	-1.728
13	-0.07	-1.526	0.863	-0.735
14	-0.671	-1.201	1.137	-2.653
15	0.178	-0.049	0.562	-2.32
16	-0.127	-0.173	0.657	-1.054
17	-0.663	-1.526	1.15	-2.206
18	0.201	-0.278	0.69	-3.622
19	1.093	-2.206	-0.226	-2.206
20	0.36	-1.201	0.797	-3.066
21	0.368	-0.777	0.641	-1.622

Standard thresholds

P-value	Threshold
0.001	4.15761
0.0005	5.07776
0.0001	7.00716