| Motif | BATF2.H13INVIVO.0.PSG.A |
| Gene (human) | BATF2 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Batf2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | BATF2.H13INVIVO.0.PSG.A |
| Gene (human) | BATF2 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Batf2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 9 |
| Consensus | TGAGTCAbh |
| GC content | 45.29% |
| Information content (bits; total / per base) | 11.034 / 1.226 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX |
| Aligned words | 500 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.853 | 0.854 | 0.795 | 0.798 | 0.679 | 0.682 | 72.328 | 72.569 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Lysate, 1 experiments | median | 0.92 | 0.905 | 0.8 | 0.782 | 0.718 | 0.701 |
| best | 0.92 | 0.905 | 0.8 | 0.782 | 0.718 | 0.701 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| Lysate, 1 experiments | median | 10.886 | 0.283 | 0.527 | 0.421 |
| best | 20.149 | 0.348 | 0.568 | 0.463 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
| TF family | B-ATF-related {1.1.4} (TFClass) |
| TF subfamily | {1.1.4.0} (TFClass) |
| TFClass ID | TFClass: 1.1.4.0.2 |
| HGNC | HGNC:25163 |
| MGI | MGI:1921731 |
| EntrezGene (human) | GeneID:116071 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:74481 (SSTAR profile) |
| UniProt ID (human) | BATF2_HUMAN |
| UniProt ID (mouse) | BATF2_MOUSE |
| UniProt AC (human) | Q8N1L9 (TFClass) |
| UniProt AC (mouse) | Q8R1H8 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 1 overall: 1 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 1 overall: 1 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | BATF2.H13INVIVO.0.PSG.A.pcm |
| PWM | BATF2.H13INVIVO.0.PSG.A.pwm |
| PFM | BATF2.H13INVIVO.0.PSG.A.pfm |
| Threshold to P-value map | BATF2.H13INVIVO.0.PSG.A.thr |
| Motif in other formats | |
| JASPAR format | BATF2.H13INVIVO.0.PSG.A_jaspar_format.txt |
| MEME format | BATF2.H13INVIVO.0.PSG.A_meme_format.meme |
| Transfac format | BATF2.H13INVIVO.0.PSG.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 7.0 | 8.0 | 26.0 | 459.0 |
| 02 | 7.0 | 11.0 | 462.0 | 20.0 |
| 03 | 379.0 | 105.0 | 1.0 | 15.0 |
| 04 | 72.0 | 0.0 | 428.0 | 0.0 |
| 05 | 6.0 | 5.0 | 9.0 | 480.0 |
| 06 | 21.0 | 476.0 | 2.0 | 1.0 |
| 07 | 490.0 | 5.0 | 0.0 | 5.0 |
| 08 | 31.0 | 141.0 | 121.0 | 207.0 |
| 09 | 116.0 | 193.0 | 45.0 | 146.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.014 | 0.016 | 0.052 | 0.918 |
| 02 | 0.014 | 0.022 | 0.924 | 0.04 |
| 03 | 0.758 | 0.21 | 0.002 | 0.03 |
| 04 | 0.144 | 0.0 | 0.856 | 0.0 |
| 05 | 0.012 | 0.01 | 0.018 | 0.96 |
| 06 | 0.042 | 0.952 | 0.004 | 0.002 |
| 07 | 0.98 | 0.01 | 0.0 | 0.01 |
| 08 | 0.062 | 0.282 | 0.242 | 0.414 |
| 09 | 0.232 | 0.386 | 0.09 | 0.292 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.694 | -2.584 | -1.525 | 1.292 |
| 02 | -2.694 | -2.311 | 1.298 | -1.77 |
| 03 | 1.101 | -0.172 | -3.903 | -2.034 |
| 04 | -0.543 | -4.4 | 1.222 | -4.4 |
| 05 | -2.819 | -2.961 | -2.484 | 1.336 |
| 06 | -1.725 | 1.328 | -3.573 | -3.903 |
| 07 | 1.357 | -2.961 | -4.4 | -2.961 |
| 08 | -1.358 | 0.119 | -0.032 | 0.5 |
| 09 | -0.074 | 0.43 | -1.0 | 0.154 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.484985 |
| 0.0005 | 5.358425 |
| 0.0001 | 7.56395 |