BATF2.H13RSNP.0.PSG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF2.H13RSNP.0.PSG.D
Gene (human)	BATF2 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Batf2
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	13
Consensus	RTGACGTCATMvb
GC content	47.76%
Information content (bits; total / per base)	18.604 / 1.431
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	7905
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.623	0.628	0.49	0.496	0.53	0.533	4.567	5.959

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Lysate, 1 experiments	median	1.0	0.999	0.977	0.975	0.85	0.857
Lysate, 1 experiments	best	1.0	0.999	0.977	0.975	0.85	0.857

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 1 experiments	median	76.194	0.533	0.794	0.707
Lysate, 1 experiments	best	166.131	0.596	0.815	0.74

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.2
HGNC	HGNC:25163
MGI	MGI:1921731
EntrezGene (human)	GeneID:116071 (SSTAR profile)
EntrezGene (mouse)	GeneID:74481 (SSTAR profile)
UniProt ID (human)	BATF2_HUMAN
UniProt ID (mouse)	BATF2_MOUSE
UniProt AC (human)	Q8N1L9 (TFClass)
UniProt AC (mouse)	Q8R1H8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	BATF2.H13RSNP.0.PSG.D.pcm
PWM	BATF2.H13RSNP.0.PSG.D.pwm
PFM	BATF2.H13RSNP.0.PSG.D.pfm
Threshold to P-value map	BATF2.H13RSNP.0.PSG.D.thr
Motif in other formats
JASPAR format	BATF2.H13RSNP.0.PSG.D_jaspar_format.txt
MEME format	BATF2.H13RSNP.0.PSG.D_meme_format.meme
Transfac format	BATF2.H13RSNP.0.PSG.D_transfac_format.txt
Homer format	BATF2.H13RSNP.0.PSG.D_homer_format_0.001.txt BATF2.H13RSNP.0.PSG.D_homer_format_0.0005.txt BATF2.H13RSNP.0.PSG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	5395.5	412.5	1919.5	177.5
02	64.25	137.25	5.25	7698.25
03	21.0	219.0	7028.0	637.0
04	7897.0	2.0	6.0	0.0
05	0.0	7905.0	0.0	0.0
06	4.0	1.0	7900.0	0.0
07	0.0	1.0	0.0	7904.0
08	10.0	7894.0	0.0	1.0
09	7902.0	3.0	0.0	0.0
10	7.0	714.0	39.0	7145.0
11	789.0	6185.0	204.0	727.0
12	2473.0	1995.0	2615.0	822.0
13	1123.0	2666.0	1232.0	2884.0

PFM

	A	C	G	T
01	0.683	0.052	0.243	0.022
02	0.008	0.017	0.001	0.974
03	0.003	0.028	0.889	0.081
04	0.999	0.0	0.001	0.0
05	0.0	1.0	0.0	0.0
06	0.001	0.0	0.999	0.0
07	0.0	0.0	0.0	1.0
08	0.001	0.999	0.0	0.0
09	1.0	0.0	0.0	0.0
10	0.001	0.09	0.005	0.904
11	0.1	0.782	0.026	0.092
12	0.313	0.252	0.331	0.104
13	0.142	0.337	0.156	0.365

PWM

	A	C	G	T
01	1.004	-1.562	-0.029	-2.399
02	-3.393	-2.652	-5.576	1.359
03	-4.444	-2.191	1.268	-1.13
04	1.384	-6.145	-5.481	-6.782
05	-6.782	1.385	-6.782	-6.782
06	-5.759	-6.413	1.385	-6.782
07	-6.782	-6.413	-6.782	1.385
08	-5.085	1.384	-6.782	-6.413
09	1.385	-5.933	-6.782	-6.782
10	-5.366	-1.016	-3.871	1.284
11	-0.916	1.14	-2.261	-0.998
12	0.224	0.009	0.28	-0.876
13	-0.564	0.299	-0.472	0.378

Standard thresholds

P-value	Threshold
0.001	-2.985335
0.0005	-0.94458
0.0001	3.363885