BATF3.H13CORE.2.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF3.H13CORE.2.SM.B
Gene (human)	BATF3 (GeneCards)
Gene synonyms (human)	SNFT
Gene (mouse)	Batf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	2
Quality	B

Motif length	14
Consensus	nbKATGACGTCAbn
GC content	46.91%
Information content (bits; total / per base)	15.506 / 1.108
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9942
Previous names	BATF3.H12CORE.2.SM.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.581	0.667	0.404	0.51	0.521	0.627	1.116	1.915	4.77	37.208
Mouse	1 (5)	0.574	0.581	0.395	0.406	0.498	0.503	1.102	1.126	2.585	4.292

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.991	0.989	0.886	0.883	0.744	0.757
Overall, 4 experiments	best	0.999	0.998	0.983	0.98	0.884	0.885
Methyl HT-SELEX, 2 experiments	median	0.991	0.989	0.886	0.883	0.744	0.757
Methyl HT-SELEX, 2 experiments	best	0.993	0.991	0.897	0.894	0.753	0.766
Non-Methyl HT-SELEX, 2 experiments	median	0.932	0.926	0.856	0.852	0.761	0.764
Non-Methyl HT-SELEX, 2 experiments	best	0.999	0.998	0.983	0.98	0.884	0.885

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.3
HGNC	HGNC:28915
MGI	MGI:1925491
EntrezGene (human)	GeneID:55509 (SSTAR profile)
EntrezGene (mouse)	GeneID:381319 (SSTAR profile)
UniProt ID (human)	BATF3_HUMAN
UniProt ID (mouse)	BATF3_MOUSE
UniProt AC (human)	Q9NR55 (TFClass)
UniProt AC (mouse)	Q9D275 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	2
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	BATF3.H13CORE.2.SM.B.pcm
PWM	BATF3.H13CORE.2.SM.B.pwm
PFM	BATF3.H13CORE.2.SM.B.pfm
Threshold to P-value map	BATF3.H13CORE.2.SM.B.thr
Motif in other formats
JASPAR format	BATF3.H13CORE.2.SM.B_jaspar_format.txt
MEME format	BATF3.H13CORE.2.SM.B_meme_format.meme
Transfac format	BATF3.H13CORE.2.SM.B_transfac_format.txt
Homer format	BATF3.H13CORE.2.SM.B_homer_format_0.001.txt BATF3.H13CORE.2.SM.B_homer_format_0.0005.txt BATF3.H13CORE.2.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3510.25	1664.25	2785.25	1982.25
02	1124.0	2327.0	1529.0	4962.0
03	1023.0	543.0	7199.0	1177.0
04	7756.0	867.0	1300.0	19.0
05	2.0	0.0	25.0	9915.0
06	2.0	0.0	9891.0	49.0
07	9936.0	1.0	4.0	1.0
08	0.0	8677.0	19.0	1246.0
09	605.0	6.0	9329.0	2.0
10	110.0	209.0	60.0	9563.0
11	1284.0	8002.0	481.0	175.0
12	9070.0	163.0	405.0	304.0
13	849.5	3132.5	1592.5	4367.5
14	2767.0	3010.0	2074.0	2091.0

PFM

	A	C	G	T
01	0.353	0.167	0.28	0.199
02	0.113	0.234	0.154	0.499
03	0.103	0.055	0.724	0.118
04	0.78	0.087	0.131	0.002
05	0.0	0.0	0.003	0.997
06	0.0	0.0	0.995	0.005
07	0.999	0.0	0.0	0.0
08	0.0	0.873	0.002	0.125
09	0.061	0.001	0.938	0.0
10	0.011	0.021	0.006	0.962
11	0.129	0.805	0.048	0.018
12	0.912	0.016	0.041	0.031
13	0.085	0.315	0.16	0.439
14	0.278	0.303	0.209	0.21

PWM

	A	C	G	T
01	0.345	-0.401	0.114	-0.226
02	-0.792	-0.066	-0.485	0.691
03	-0.886	-1.518	1.063	-0.746
04	1.137	-1.051	-0.647	-4.76
05	-6.36	-6.986	-4.512	1.383
06	-6.36	-6.986	1.38	-3.881
07	1.385	-6.625	-5.978	-6.625
08	-6.986	1.25	-4.76	-0.69
09	-1.41	-5.703	1.322	-6.36
10	-3.098	-2.466	-3.687	1.347
11	-0.66	1.169	-1.639	-2.641
12	1.294	-2.711	-1.81	-2.095
13	-1.072	0.231	-0.445	0.563
14	0.107	0.191	-0.181	-0.173

Standard thresholds

P-value	Threshold
0.001	1.59796
0.0005	3.13901
0.0001	6.23566