BATF3.H13INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	BATF3.H13INVIVO.1.P.B
Gene (human)	BATF3 (GeneCards)
Gene synonyms (human)	SNFT
Gene (mouse)	Batf3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	16
Consensus	nnndvTGACTMAdhhn
GC content	37.72%
Information content (bits; total / per base)	11.595 / 0.725
Data sources	ChIP-Seq
Aligned words	1000
Previous names	BATF3.H12INVIVO.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (25)	0.877	0.898	0.781	0.833	0.852	0.874	3.016	3.329	139.585	244.854
Mouse	1 (5)	0.799	0.809	0.703	0.715	0.749	0.759	2.309	2.382	102.745	109.119

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.57	0.545	0.551	0.533	0.534	0.524
Overall, 4 experiments	best	0.587	0.557	0.569	0.545	0.554	0.536
Methyl HT-SELEX, 2 experiments	median	0.564	0.544	0.546	0.532	0.533	0.523
Methyl HT-SELEX, 2 experiments	best	0.575	0.55	0.555	0.537	0.539	0.527
Non-Methyl HT-SELEX, 2 experiments	median	0.576	0.549	0.558	0.537	0.542	0.529
Non-Methyl HT-SELEX, 2 experiments	best	0.587	0.557	0.569	0.545	0.554	0.536

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	B-ATF-related {1.1.4} (TFClass)
TF subfamily	{1.1.4.0} (TFClass)
TFClass ID	TFClass: 1.1.4.0.3
HGNC	HGNC:28915
MGI	MGI:1925491
EntrezGene (human)	GeneID:55509 (SSTAR profile)
EntrezGene (mouse)	GeneID:381319 (SSTAR profile)
UniProt ID (human)	BATF3_HUMAN
UniProt ID (mouse)	BATF3_MOUSE
UniProt AC (human)	Q9NR55 (TFClass)
UniProt AC (mouse)	Q9D275 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 1 mouse
HT-SELEX	2
Methyl-HT-SELEX	2
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	BATF3.H13INVIVO.1.P.B.pcm
PWM	BATF3.H13INVIVO.1.P.B.pwm
PFM	BATF3.H13INVIVO.1.P.B.pfm
Threshold to P-value map	BATF3.H13INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	BATF3.H13INVIVO.1.P.B_jaspar_format.txt
MEME format	BATF3.H13INVIVO.1.P.B_meme_format.meme
Transfac format	BATF3.H13INVIVO.1.P.B_transfac_format.txt
Homer format	BATF3.H13INVIVO.1.P.B_homer_format_0.001.txt BATF3.H13INVIVO.1.P.B_homer_format_0.0005.txt BATF3.H13INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	296.0	279.0	181.0	244.0
02	306.0	168.0	283.0	243.0
03	366.0	157.0	191.0	286.0
04	333.0	78.0	219.0	370.0
05	500.0	224.0	144.0	132.0
06	8.0	5.0	5.0	982.0
07	10.0	18.0	815.0	157.0
08	979.0	6.0	5.0	10.0
09	1.0	924.0	0.0	75.0
10	58.0	5.0	5.0	932.0
11	124.0	775.0	85.0	16.0
12	914.0	14.0	8.0	64.0
13	218.0	102.0	223.0	457.0
14	405.0	234.0	62.0	299.0
15	281.0	214.0	106.0	399.0
16	202.0	344.0	156.0	298.0

PFM

	A	C	G	T
01	0.296	0.279	0.181	0.244
02	0.306	0.168	0.283	0.243
03	0.366	0.157	0.191	0.286
04	0.333	0.078	0.219	0.37
05	0.5	0.224	0.144	0.132
06	0.008	0.005	0.005	0.982
07	0.01	0.018	0.815	0.157
08	0.979	0.006	0.005	0.01
09	0.001	0.924	0.0	0.075
10	0.058	0.005	0.005	0.932
11	0.124	0.775	0.085	0.016
12	0.914	0.014	0.008	0.064
13	0.218	0.102	0.223	0.457
14	0.405	0.234	0.062	0.299
15	0.281	0.214	0.106	0.399
16	0.202	0.344	0.156	0.298

PWM

	A	C	G	T
01	0.168	0.109	-0.32	-0.024
02	0.201	-0.394	0.123	-0.028
03	0.379	-0.461	-0.267	0.134
04	0.285	-1.15	-0.131	0.39
05	0.69	-0.109	-0.547	-0.633
06	-3.253	-3.622	-3.622	1.363
07	-3.066	-2.546	1.177	-0.461
08	1.36	-3.484	-3.622	-3.066
09	-4.525	1.302	-4.982	-1.188
10	-1.439	-3.622	-3.622	1.311
11	-0.694	1.127	-1.066	-2.653
12	1.291	-2.773	-3.253	-1.343
13	-0.136	-0.887	-0.113	0.6
14	0.48	-0.066	-1.374	0.178
15	0.116	-0.154	-0.849	0.465
16	-0.212	0.317	-0.467	0.175

Standard thresholds

P-value	Threshold
0.001	4.24521
0.0005	5.25801
0.0001	7.34121