CAMTA1.H13CORE.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CAMTA1.H13CORE.0.PSGI.A
Gene (human)	CAMTA1 (GeneCards)
Gene synonyms (human)	KIAA0833
Gene (mouse)	Camta1
Gene synonyms (mouse)	Kiaa0833
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	13
Consensus	nhdvCGCAdYvhv
GC content	59.77%
Information content (bits; total / per base)	9.446 / 0.727
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	797
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.838	0.838	0.723	0.723	0.681	0.681	48.092	48.092

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.999	0.999	0.946	0.946	0.779	0.801
overall, 3 experiments	best	1.0	1.0	0.974	0.974	0.809	0.831
Lysate, 2 experiments	median	1.0	1.0	0.96	0.96	0.794	0.816
Lysate, 2 experiments	best	1.0	1.0	0.974	0.974	0.809	0.831
GFPIVT, 1 experiments	median	0.892	0.879	0.742	0.74	0.641	0.652
GFPIVT, 1 experiments	best	0.892	0.879	0.742	0.74	0.641	0.652

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	382.639	0.736	0.883	0.813
overall, 3 experiments	best	631.523	0.825	0.918	0.857
Lysate, 2 experiments	median	329.515	0.621	0.784	0.74
Lysate, 2 experiments	best	468.921	0.699	0.837	0.795
GFPIVT, 1 experiments	median	429.212	0.779	0.916	0.831
GFPIVT, 1 experiments	best	631.523	0.825	0.918	0.857

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.97	0.962	0.923	0.9	0.84	0.818
Overall, 1 experiments	best	0.97	0.962	0.923	0.9	0.84	0.818

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	CG-1 domain factors {0.6} (TFClass)
TF family	CAMTA {0.6.1} (TFClass)
TF subfamily	{0.6.1.0} (TFClass)
TFClass ID	TFClass: 0.6.1.0.1
HGNC	HGNC:18806
MGI	MGI:2140230
EntrezGene (human)	GeneID:23261 (SSTAR profile)
EntrezGene (mouse)	GeneID:100072 (SSTAR profile)
UniProt ID (human)	CMTA1_HUMAN
UniProt ID (mouse)	CMTA1_MOUSE
UniProt AC (human)	Q9Y6Y1 (TFClass)
UniProt AC (mouse)	A2A891 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	CAMTA1.H13CORE.0.PSGI.A.pcm
PWM	CAMTA1.H13CORE.0.PSGI.A.pwm
PFM	CAMTA1.H13CORE.0.PSGI.A.pfm
Threshold to P-value map	CAMTA1.H13CORE.0.PSGI.A.thr
Motif in other formats
JASPAR format	CAMTA1.H13CORE.0.PSGI.A_jaspar_format.txt
MEME format	CAMTA1.H13CORE.0.PSGI.A_meme_format.meme
Transfac format	CAMTA1.H13CORE.0.PSGI.A_transfac_format.txt
Homer format	CAMTA1.H13CORE.0.PSGI.A_homer_format_0.001.txt CAMTA1.H13CORE.0.PSGI.A_homer_format_0.0005.txt CAMTA1.H13CORE.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	186.5	202.5	217.5	190.5
02	130.25	183.25	86.25	397.25
03	167.0	65.0	412.0	153.0
04	229.0	400.0	103.0	65.0
05	0.0	727.0	20.0	50.0
06	0.0	0.0	796.0	1.0
07	0.0	794.0	0.0	3.0
08	788.0	2.0	7.0	0.0
09	153.0	53.0	239.0	352.0
10	34.0	192.0	96.0	475.0
11	148.0	162.0	403.0	84.0
12	153.75	383.75	116.75	142.75
13	151.25	219.25	312.25	114.25

PFM

	A	C	G	T
01	0.234	0.254	0.273	0.239
02	0.163	0.23	0.108	0.498
03	0.21	0.082	0.517	0.192
04	0.287	0.502	0.129	0.082
05	0.0	0.912	0.025	0.063
06	0.0	0.0	0.999	0.001
07	0.0	0.996	0.0	0.004
08	0.989	0.003	0.009	0.0
09	0.192	0.066	0.3	0.442
10	0.043	0.241	0.12	0.596
11	0.186	0.203	0.506	0.105
12	0.193	0.481	0.146	0.179
13	0.19	0.275	0.392	0.143

PWM

	A	C	G	T
01	-0.066	0.016	0.087	-0.045
02	-0.421	-0.083	-0.826	0.686
03	-0.175	-1.103	0.722	-0.262
04	0.138	0.693	-0.652	-1.103
05	-4.79	1.288	-2.227	-1.358
06	-4.79	-4.79	1.379	-4.321
07	-4.79	1.376	-4.79	-3.762
08	1.369	-4.003	-3.143	-4.79
09	-0.262	-1.302	0.181	0.565
10	-1.729	-0.037	-0.721	0.864
11	-0.294	-0.205	0.7	-0.852
12	-0.257	0.651	-0.529	-0.33
13	-0.273	0.095	0.446	-0.55

Standard thresholds

P-value	Threshold
0.001	5.16461
0.0005	5.96146
0.0001	7.34912