| Motif | CAMTA1.H13INVITRO.0.PSGI.A |
| Gene (human) | CAMTA1 (GeneCards) |
| Gene synonyms (human) | KIAA0833 |
| Gene (mouse) | Camta1 |
| Gene synonyms (mouse) | Kiaa0833 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | CAMTA1.H13INVITRO.0.PSGI.A |
| Gene (human) | CAMTA1 (GeneCards) |
| Gene synonyms (human) | KIAA0833 |
| Gene (mouse) | Camta1 |
| Gene synonyms (mouse) | Kiaa0833 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 14 |
| Consensus | dTKhCGCAKTShvb |
| GC content | 55.64% |
| Information content (bits; total / per base) | 13.767 / 0.983 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq |
| Aligned words | 8132 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (1) | 0.805 | 0.805 | 0.685 | 0.685 | 0.652 | 0.652 | 44.796 | 44.796 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 3 experiments | median | 0.999 | 0.999 | 0.949 | 0.949 | 0.778 | 0.802 |
| best | 1.0 | 1.0 | 0.976 | 0.975 | 0.808 | 0.831 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 0.962 | 0.962 | 0.793 | 0.817 |
| best | 1.0 | 1.0 | 0.976 | 0.975 | 0.808 | 0.831 | |
| GFPIVT, 1 experiments | median | 0.908 | 0.898 | 0.75 | 0.751 | 0.641 | 0.657 |
| best | 0.908 | 0.898 | 0.75 | 0.751 | 0.641 | 0.657 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 3 experiments | median | 379.779 | 0.73 | 0.871 | 0.815 |
| best | 558.0 | 0.829 | 0.917 | 0.872 | |
| Lysate, 2 experiments | median | 340.595 | 0.61 | 0.739 | 0.733 |
| best | 469.42 | 0.684 | 0.8 | 0.79 | |
| GFPIVT, 1 experiments | median | 402.316 | 0.783 | 0.912 | 0.843 |
| best | 558.0 | 0.829 | 0.917 | 0.872 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 1 experiments | median | 0.977 | 0.967 | 0.923 | 0.903 | 0.841 | 0.821 |
| best | 0.977 | 0.967 | 0.923 | 0.903 | 0.841 | 0.821 | |
| TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
| TF class | CG-1 domain factors {0.6} (TFClass) |
| TF family | CAMTA {0.6.1} (TFClass) |
| TF subfamily | {0.6.1.0} (TFClass) |
| TFClass ID | TFClass: 0.6.1.0.1 |
| HGNC | HGNC:18806 |
| MGI | MGI:2140230 |
| EntrezGene (human) | GeneID:23261 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:100072 (SSTAR profile) |
| UniProt ID (human) | CMTA1_HUMAN |
| UniProt ID (mouse) | CMTA1_MOUSE |
| UniProt AC (human) | Q9Y6Y1 (TFClass) |
| UniProt AC (mouse) | A2A891 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 3 overall: 2 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 1 |
| PBM | 0 |
| PCM | CAMTA1.H13INVITRO.0.PSGI.A.pcm |
| PWM | CAMTA1.H13INVITRO.0.PSGI.A.pwm |
| PFM | CAMTA1.H13INVITRO.0.PSGI.A.pfm |
| Threshold to P-value map | CAMTA1.H13INVITRO.0.PSGI.A.thr |
| Motif in other formats | |
| JASPAR format | CAMTA1.H13INVITRO.0.PSGI.A_jaspar_format.txt |
| MEME format | CAMTA1.H13INVITRO.0.PSGI.A_meme_format.meme |
| Transfac format | CAMTA1.H13INVITRO.0.PSGI.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2225.5 | 1074.5 | 1783.5 | 3048.5 |
| 02 | 305.0 | 592.0 | 182.0 | 7053.0 |
| 03 | 618.0 | 89.0 | 6194.0 | 1231.0 |
| 04 | 2247.0 | 3705.0 | 902.0 | 1278.0 |
| 05 | 2.0 | 8015.0 | 44.0 | 71.0 |
| 06 | 1.0 | 7.0 | 8117.0 | 7.0 |
| 07 | 0.0 | 8131.0 | 1.0 | 0.0 |
| 08 | 8113.0 | 9.0 | 8.0 | 2.0 |
| 09 | 1757.0 | 88.0 | 1975.0 | 4312.0 |
| 10 | 521.0 | 339.0 | 186.0 | 7086.0 |
| 11 | 693.0 | 865.0 | 6232.0 | 342.0 |
| 12 | 1445.0 | 4754.0 | 879.0 | 1054.0 |
| 13 | 1888.5 | 1667.5 | 3921.5 | 654.5 |
| 14 | 696.5 | 1216.5 | 2362.5 | 3856.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.274 | 0.132 | 0.219 | 0.375 |
| 02 | 0.038 | 0.073 | 0.022 | 0.867 |
| 03 | 0.076 | 0.011 | 0.762 | 0.151 |
| 04 | 0.276 | 0.456 | 0.111 | 0.157 |
| 05 | 0.0 | 0.986 | 0.005 | 0.009 |
| 06 | 0.0 | 0.001 | 0.998 | 0.001 |
| 07 | 0.0 | 1.0 | 0.0 | 0.0 |
| 08 | 0.998 | 0.001 | 0.001 | 0.0 |
| 09 | 0.216 | 0.011 | 0.243 | 0.53 |
| 10 | 0.064 | 0.042 | 0.023 | 0.871 |
| 11 | 0.085 | 0.106 | 0.766 | 0.042 |
| 12 | 0.178 | 0.585 | 0.108 | 0.13 |
| 13 | 0.232 | 0.205 | 0.482 | 0.08 |
| 14 | 0.086 | 0.15 | 0.291 | 0.474 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.09 | -0.637 | -0.131 | 0.405 |
| 02 | -1.891 | -1.231 | -2.402 | 1.243 |
| 03 | -1.188 | -3.105 | 1.113 | -0.501 |
| 04 | 0.1 | 0.6 | -0.811 | -0.464 |
| 05 | -6.171 | 1.371 | -3.784 | -3.324 |
| 06 | -6.439 | -5.394 | 1.384 | -5.394 |
| 07 | -6.807 | 1.385 | -6.439 | -6.807 |
| 08 | 1.383 | -5.198 | -5.291 | -6.171 |
| 09 | -0.146 | -3.116 | -0.029 | 0.751 |
| 10 | -1.358 | -1.786 | -2.381 | 1.248 |
| 11 | -1.074 | -0.853 | 1.119 | -1.777 |
| 12 | -0.341 | 0.849 | -0.837 | -0.656 |
| 13 | -0.074 | -0.198 | 0.656 | -1.131 |
| 14 | -1.069 | -0.513 | 0.15 | 0.64 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.98981 |
| 0.0005 | 4.35611 |
| 0.0001 | 6.964925 |