CAMTA1.H13INVIVO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CAMTA1.H13INVIVO.0.PSGI.A
Gene (human)	CAMTA1 (GeneCards)
Gene synonyms (human)	KIAA0833
Gene (mouse)	Camta1
Gene synonyms (mouse)	Kiaa0833
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	12
Consensus	bbKCYGCAGYvv
GC content	69.01%
Information content (bits; total / per base)	10.852 / 0.904
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	498
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.808	0.808	0.655	0.655	0.731	0.731	56.721	56.721

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.958	0.933	0.902	0.875	0.749	0.755
overall, 3 experiments	best	0.968	0.948	0.931	0.906	0.776	0.783
Lysate, 2 experiments	median	0.963	0.941	0.917	0.891	0.763	0.769
Lysate, 2 experiments	best	0.968	0.948	0.931	0.906	0.776	0.783
GFPIVT, 1 experiments	median	0.812	0.766	0.69	0.671	0.6	0.606
GFPIVT, 1 experiments	best	0.812	0.766	0.69	0.671	0.6	0.606

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
overall, 3 experiments	median	278.002	0.738	0.841	0.701
overall, 3 experiments	best	521.854	0.829	0.881	0.758
Lysate, 2 experiments	median	228.923	0.593	0.704	0.616
Lysate, 2 experiments	best	323.208	0.666	0.764	0.673
GFPIVT, 1 experiments	median	353.27	0.793	0.869	0.731
GFPIVT, 1 experiments	best	521.854	0.829	0.881	0.758

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.918	0.875	0.85	0.807	0.757	0.731
Overall, 1 experiments	best	0.918	0.875	0.85	0.807	0.757	0.731

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	CG-1 domain factors {0.6} (TFClass)
TF family	CAMTA {0.6.1} (TFClass)
TF subfamily	{0.6.1.0} (TFClass)
TFClass ID	TFClass: 0.6.1.0.1
HGNC	HGNC:18806
MGI	MGI:2140230
EntrezGene (human)	GeneID:23261 (SSTAR profile)
EntrezGene (mouse)	GeneID:100072 (SSTAR profile)
UniProt ID (human)	CMTA1_HUMAN
UniProt ID (mouse)	CMTA1_MOUSE
UniProt AC (human)	Q9Y6Y1 (TFClass)
UniProt AC (mouse)	A2A891 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	CAMTA1.H13INVIVO.0.PSGI.A.pcm
PWM	CAMTA1.H13INVIVO.0.PSGI.A.pwm
PFM	CAMTA1.H13INVIVO.0.PSGI.A.pfm
Threshold to P-value map	CAMTA1.H13INVIVO.0.PSGI.A.thr
Motif in other formats
JASPAR format	CAMTA1.H13INVIVO.0.PSGI.A_jaspar_format.txt
MEME format	CAMTA1.H13INVIVO.0.PSGI.A_meme_format.meme
Transfac format	CAMTA1.H13INVIVO.0.PSGI.A_transfac_format.txt
Homer format	CAMTA1.H13INVIVO.0.PSGI.A_homer_format_0.001.txt CAMTA1.H13INVIVO.0.PSGI.A_homer_format_0.0005.txt CAMTA1.H13INVIVO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	70.25	245.25	100.25	82.25
02	74.25	141.25	82.25	200.25
03	42.25	54.25	303.25	98.25
04	21.25	399.25	68.25	9.25
05	17.25	374.25	8.25	98.25
06	8.25	3.25	479.25	7.25
07	1.0	495.0	1.0	1.0
08	493.0	0.0	0.0	5.0
09	24.0	3.0	416.0	55.0
10	33.0	174.0	9.0	282.0
11	53.0	128.0	279.0	38.0
12	78.0	267.0	93.0	60.0

PFM

	A	C	G	T
01	0.141	0.492	0.201	0.165
02	0.149	0.284	0.165	0.402
03	0.085	0.109	0.609	0.197
04	0.043	0.802	0.137	0.019
05	0.035	0.752	0.017	0.197
06	0.017	0.007	0.962	0.015
07	0.002	0.994	0.002	0.002
08	0.99	0.0	0.0	0.01
09	0.048	0.006	0.835	0.11
10	0.066	0.349	0.018	0.566
11	0.106	0.257	0.56	0.076
12	0.157	0.536	0.187	0.12

PWM

	A	C	G	T
01	-0.563	0.672	-0.214	-0.408
02	-0.509	0.125	-0.408	0.471
03	-1.057	-0.815	0.883	-0.234
04	-1.71	1.157	-0.591	-2.457
05	-1.903	1.092	-2.554	-0.234
06	-2.554	-3.268	1.339	-2.662
07	-3.9	1.371	-3.9	-3.9
08	1.367	-4.397	-4.397	-2.957
09	-1.596	-3.321	1.198	-0.802
10	-1.294	0.331	-2.48	0.811
11	-0.838	0.027	0.8	-1.159
12	-0.46	0.756	-0.288	-0.717

Standard thresholds

P-value	Threshold
0.001	4.59982
0.0005	5.52516
0.0001	7.36443