CAMTA2.H13CORE.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CAMTA2.H13CORE.0.PSGI.A
Gene (human)	CAMTA2 (GeneCards)
Gene synonyms (human)	KIAA0909
Gene (mouse)	Camta2
Gene synonyms (mouse)	Kiaa0909
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	15
Consensus	hdvCGCAATGCGbhd
GC content	58.26%
Information content (bits; total / per base)	16.508 / 1.101
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	9783
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.671	0.671	0.61	0.61	0.554	0.554	5.409	5.409

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Lysate, 1 experiments	median	1.0	1.0	1.0	1.0	0.999	0.998
Lysate, 1 experiments	best	1.0	1.0	1.0	1.0	0.999	0.998

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 1 experiments	median	617.167	0.851	0.954	0.938
Lysate, 1 experiments	best	800.959	0.926	0.977	0.967

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.803	0.765	0.721	0.686	0.65	0.631
Overall, 1 experiments	best	0.803	0.765	0.721	0.686	0.65	0.631

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	CG-1 domain factors {0.6} (TFClass)
TF family	CAMTA {0.6.1} (TFClass)
TF subfamily	{0.6.1.0} (TFClass)
TFClass ID	TFClass: 0.6.1.0.2
HGNC	HGNC:18807
MGI	MGI:2135957
EntrezGene (human)	GeneID:23125 (SSTAR profile)
EntrezGene (mouse)	GeneID:216874 (SSTAR profile)
UniProt ID (human)	CMTA2_HUMAN
UniProt ID (mouse)	CMTA2_MOUSE
UniProt AC (human)	O94983 (TFClass)
UniProt AC (mouse)	Q80Y50 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	CAMTA2.H13CORE.0.PSGI.A.pcm
PWM	CAMTA2.H13CORE.0.PSGI.A.pwm
PFM	CAMTA2.H13CORE.0.PSGI.A.pfm
Threshold to P-value map	CAMTA2.H13CORE.0.PSGI.A.thr
Motif in other formats
JASPAR format	CAMTA2.H13CORE.0.PSGI.A_jaspar_format.txt
MEME format	CAMTA2.H13CORE.0.PSGI.A_meme_format.meme
Transfac format	CAMTA2.H13CORE.0.PSGI.A_transfac_format.txt
Homer format	CAMTA2.H13CORE.0.PSGI.A_homer_format_0.001.txt CAMTA2.H13CORE.0.PSGI.A_homer_format_0.0005.txt CAMTA2.H13CORE.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2019.75	2365.75	1476.75	3920.75
02	2665.0	1157.0	3260.0	2701.0
03	2493.0	4931.0	1460.0	899.0
04	53.0	8268.0	204.0	1258.0
05	37.0	65.0	9599.0	82.0
06	6.0	9661.0	26.0	90.0
07	9762.0	4.0	5.0	12.0
08	9038.0	0.0	745.0	0.0
09	4.0	7.0	4.0	9768.0
10	97.0	22.0	9656.0	8.0
11	89.0	9625.0	40.0	29.0
12	1029.0	192.0	8499.0	63.0
13	1081.0	1658.0	4383.0	2661.0
14	2837.0	3632.0	975.0	2339.0
15	4250.5	1474.5	2101.5	1956.5

PFM

	A	C	G	T
01	0.206	0.242	0.151	0.401
02	0.272	0.118	0.333	0.276
03	0.255	0.504	0.149	0.092
04	0.005	0.845	0.021	0.129
05	0.004	0.007	0.981	0.008
06	0.001	0.988	0.003	0.009
07	0.998	0.0	0.001	0.001
08	0.924	0.0	0.076	0.0
09	0.0	0.001	0.0	0.998
10	0.01	0.002	0.987	0.001
11	0.009	0.984	0.004	0.003
12	0.105	0.02	0.869	0.006
13	0.11	0.169	0.448	0.272
14	0.29	0.371	0.1	0.239
15	0.434	0.151	0.215	0.2

PWM

	A	C	G	T
01	-0.191	-0.033	-0.504	0.472
02	0.086	-0.747	0.287	0.099
03	0.019	0.701	-0.515	-0.999
04	-3.79	1.217	-2.474	-0.664
05	-4.132	-3.594	1.367	-3.369
06	-5.687	1.373	-4.46	-3.278
07	1.383	-5.963	-5.816	-5.143
08	1.306	-6.971	-1.187	-6.971
09	-5.963	-5.573	-5.963	1.384
10	-3.205	-4.613	1.373	-5.471
11	-3.289	1.369	-4.058	-4.36
12	-0.864	-2.534	1.245	-3.624
13	-0.815	-0.388	0.583	0.084
14	0.148	0.395	-0.918	-0.045
15	0.552	-0.505	-0.152	-0.223

Standard thresholds

P-value	Threshold
0.001	0.45616
0.0005	2.08231
0.0001	5.43616