CAMTA2.H13INVITRO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CAMTA2.H13INVITRO.0.PSGI.A
Gene (human)	CAMTA2 (GeneCards)
Gene synonyms (human)	KIAA0909
Gene (mouse)	Camta2
Gene synonyms (mouse)	Kiaa0909
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	13
Consensus	WKbCGCAnTGSSb
GC content	61.97%
Information content (bits; total / per base)	13.352 / 1.027
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	178
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.61	0.61	0.569	0.569	0.423	0.423	3.538	3.538

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Lysate, 1 experiments	median	1.0	0.999	0.999	0.999	0.998	0.997
Lysate, 1 experiments	best	1.0	0.999	0.999	0.999	0.998	0.997

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 1 experiments	median	598.886	0.866	0.954	0.915
Lysate, 1 experiments	best	747.18	0.913	0.969	0.936

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.83	0.804	0.756	0.72	0.69	0.662
Overall, 1 experiments	best	0.83	0.804	0.756	0.72	0.69	0.662

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	CG-1 domain factors {0.6} (TFClass)
TF family	CAMTA {0.6.1} (TFClass)
TF subfamily	{0.6.1.0} (TFClass)
TFClass ID	TFClass: 0.6.1.0.2
HGNC	HGNC:18807
MGI	MGI:2135957
EntrezGene (human)	GeneID:23125 (SSTAR profile)
EntrezGene (mouse)	GeneID:216874 (SSTAR profile)
UniProt ID (human)	CMTA2_HUMAN
UniProt ID (mouse)	CMTA2_MOUSE
UniProt AC (human)	O94983 (TFClass)
UniProt AC (mouse)	Q80Y50 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	CAMTA2.H13INVITRO.0.PSGI.A.pcm
PWM	CAMTA2.H13INVITRO.0.PSGI.A.pwm
PFM	CAMTA2.H13INVITRO.0.PSGI.A.pfm
Threshold to P-value map	CAMTA2.H13INVITRO.0.PSGI.A.thr
Motif in other formats
JASPAR format	CAMTA2.H13INVITRO.0.PSGI.A_jaspar_format.txt
MEME format	CAMTA2.H13INVITRO.0.PSGI.A_meme_format.meme
Transfac format	CAMTA2.H13INVITRO.0.PSGI.A_transfac_format.txt
Homer format	CAMTA2.H13INVITRO.0.PSGI.A_homer_format_0.001.txt CAMTA2.H13INVITRO.0.PSGI.A_homer_format_0.0005.txt CAMTA2.H13INVITRO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	38.0	11.0	18.0	111.0
02	6.0	3.0	130.0	39.0
03	22.0	51.0	81.0	24.0
04	0.0	128.0	0.0	50.0
05	1.0	0.0	177.0	0.0
06	0.0	178.0	0.0	0.0
07	177.0	0.0	1.0	0.0
08	57.0	28.0	57.0	36.0
09	1.0	3.0	2.0	172.0
10	6.0	1.0	167.0	4.0
11	13.0	125.0	29.0	11.0
12	17.0	42.0	105.0	14.0
13	20.0	32.0	65.0	61.0

PFM

	A	C	G	T
01	0.213	0.062	0.101	0.624
02	0.034	0.017	0.73	0.219
03	0.124	0.287	0.455	0.135
04	0.0	0.719	0.0	0.281
05	0.006	0.0	0.994	0.0
06	0.0	1.0	0.0	0.0
07	0.994	0.0	0.006	0.0
08	0.32	0.157	0.32	0.202
09	0.006	0.017	0.011	0.966
10	0.034	0.006	0.938	0.022
11	0.073	0.702	0.163	0.062
12	0.096	0.236	0.59	0.079
13	0.112	0.18	0.365	0.343

PWM

	A	C	G	T
01	-0.153	-1.315	-0.864	0.897
02	-1.837	-2.367	1.053	-0.128
03	-0.676	0.133	0.586	-0.594
04	-3.565	1.038	-3.565	0.113
05	-2.993	-3.565	1.359	-3.565
06	-3.565	1.365	-3.565	-3.565
07	1.359	-3.565	-2.993	-3.565
08	0.241	-0.447	0.241	-0.205
09	-2.993	-2.367	-2.632	1.331
10	-1.837	-2.993	1.302	-2.157
11	-1.164	1.014	-0.413	-1.315
12	-0.918	-0.056	0.842	-1.097
13	-0.766	-0.319	0.37	0.308

Standard thresholds

P-value	Threshold
0.001	3.897015
0.0005	4.94681
0.0001	7.165275