CAMTA2.H13INVIVO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CAMTA2.H13INVIVO.0.PSGI.A
Gene (human)	CAMTA2 (GeneCards)
Gene synonyms (human)	KIAA0909
Gene (mouse)	Camta2
Gene synonyms (mouse)	Kiaa0909
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	15
Consensus	dSYGCAATGCRShdd
GC content	60.83%
Information content (bits; total / per base)	17.28 / 1.152
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	386
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (1)	0.694	0.694	0.616	0.616	0.678	0.678	3.721	3.721

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Lysate, 1 experiments	median	0.999	0.998	0.999	0.998	0.997	0.996
Lysate, 1 experiments	best	0.999	0.998	0.999	0.998	0.997	0.996

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 1 experiments	median	659.705	0.891	0.927	0.904
Lysate, 1 experiments	best	803.409	0.945	0.961	0.945

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.749	0.703	0.691	0.65	0.638	0.61
Overall, 1 experiments	best	0.749	0.703	0.691	0.65	0.638	0.61

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	CG-1 domain factors {0.6} (TFClass)
TF family	CAMTA {0.6.1} (TFClass)
TF subfamily	{0.6.1.0} (TFClass)
TFClass ID	TFClass: 0.6.1.0.2
HGNC	HGNC:18807
MGI	MGI:2135957
EntrezGene (human)	GeneID:23125 (SSTAR profile)
EntrezGene (mouse)	GeneID:216874 (SSTAR profile)
UniProt ID (human)	CMTA2_HUMAN
UniProt ID (mouse)	CMTA2_MOUSE
UniProt AC (human)	O94983 (TFClass)
UniProt AC (mouse)	Q80Y50 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	CAMTA2.H13INVIVO.0.PSGI.A.pcm
PWM	CAMTA2.H13INVIVO.0.PSGI.A.pwm
PFM	CAMTA2.H13INVIVO.0.PSGI.A.pfm
Threshold to P-value map	CAMTA2.H13INVIVO.0.PSGI.A.thr
Motif in other formats
JASPAR format	CAMTA2.H13INVIVO.0.PSGI.A_jaspar_format.txt
MEME format	CAMTA2.H13INVIVO.0.PSGI.A_meme_format.meme
Transfac format	CAMTA2.H13INVIVO.0.PSGI.A_transfac_format.txt
Homer format	CAMTA2.H13INVIVO.0.PSGI.A_homer_format_0.001.txt CAMTA2.H13INVIVO.0.PSGI.A_homer_format_0.0005.txt CAMTA2.H13INVIVO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	108.0	47.0	178.0	53.0
02	25.0	302.0	52.0	7.0
03	3.0	132.0	1.0	250.0
04	0.0	0.0	386.0	0.0
05	0.0	384.0	2.0	0.0
06	386.0	0.0	0.0	0.0
07	285.0	0.0	101.0	0.0
08	0.0	0.0	0.0	386.0
09	0.0	0.0	386.0	0.0
10	4.0	375.0	6.0	1.0
11	197.0	7.0	179.0	3.0
12	18.0	60.0	289.0	19.0
13	75.0	141.0	37.0	133.0
14	119.0	39.0	174.0	54.0
15	73.0	67.0	177.0	69.0

PFM

	A	C	G	T
01	0.28	0.122	0.461	0.137
02	0.065	0.782	0.135	0.018
03	0.008	0.342	0.003	0.648
04	0.0	0.0	1.0	0.0
05	0.0	0.995	0.005	0.0
06	1.0	0.0	0.0	0.0
07	0.738	0.0	0.262	0.0
08	0.0	0.0	0.0	1.0
09	0.0	0.0	1.0	0.0
10	0.01	0.972	0.016	0.003
11	0.51	0.018	0.464	0.008
12	0.047	0.155	0.749	0.049
13	0.194	0.365	0.096	0.345
14	0.308	0.101	0.451	0.14
15	0.189	0.174	0.459	0.179

PWM

	A	C	G	T
01	0.111	-0.704	0.605	-0.587
02	-1.308	1.13	-0.605	-2.446
03	-3.083	0.309	-3.673	0.943
04	-4.187	-4.187	1.375	-4.187
05	-4.187	1.37	-3.335	-4.187
06	1.375	-4.187	-4.187	-4.187
07	1.073	-4.187	0.045	-4.187
08	-4.187	-4.187	-4.187	1.375
09	-4.187	-4.187	1.375	-4.187
10	-2.882	1.346	-2.571	-3.673
11	0.706	-2.446	0.611	-3.083
12	-1.615	-0.466	1.087	-1.565
13	-0.248	0.374	-0.934	0.317
14	0.207	-0.884	0.583	-0.569
15	-0.274	-0.358	0.6	-0.329

Standard thresholds

P-value	Threshold
0.001	1.17041
0.0005	2.63326
0.0001	5.69191