CEBPA.H13INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CEBPA.H13INVIVO.0.P.B
Gene (human)	CEBPA (GeneCards)
Gene synonyms (human)	CEBP
Gene (mouse)	Cebpa
Gene synonyms (mouse)	Cebp
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	dRTTRYGCAAYv
GC content	41.13%
Information content (bits; total / per base)	12.818 / 1.068
Data sources	ChIP-Seq
Aligned words	957
Previous names	CEBPA.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	25 (142)	0.946	0.978	0.892	0.945	0.932	0.97	4.017	4.623	396.709	925.26
Mouse	83 (494)	0.97	0.992	0.931	0.982	0.932	0.975	3.577	4.738	467.502	843.194

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	5.265	19.574	0.406	0.337

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	CEBP {1.1.8.1} (TFClass)
TFClass ID	TFClass: 1.1.8.1.1
HGNC	HGNC:1833
MGI	MGI:99480
EntrezGene (human)	GeneID:1050 (SSTAR profile)
EntrezGene (mouse)	GeneID:12606 (SSTAR profile)
UniProt ID (human)	CEBPA_HUMAN
UniProt ID (mouse)	CEBPA_MOUSE
UniProt AC (human)	P49715 (TFClass)
UniProt AC (mouse)	P53566 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	25 human, 83 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	CEBPA.H13INVIVO.0.P.B.pcm
PWM	CEBPA.H13INVIVO.0.P.B.pwm
PFM	CEBPA.H13INVIVO.0.P.B.pfm
Threshold to P-value map	CEBPA.H13INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	CEBPA.H13INVIVO.0.P.B_jaspar_format.txt
MEME format	CEBPA.H13INVIVO.0.P.B_meme_format.meme
Transfac format	CEBPA.H13INVIVO.0.P.B_transfac_format.txt
Homer format	CEBPA.H13INVIVO.0.P.B_homer_format_0.001.txt CEBPA.H13INVIVO.0.P.B_homer_format_0.0005.txt CEBPA.H13INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	246.0	71.0	304.0	336.0
02	404.0	110.0	424.0	19.0
03	2.0	1.0	1.0	953.0
04	1.0	1.0	227.0	728.0
05	298.0	4.0	507.0	148.0
06	79.0	391.0	52.0	435.0
07	0.0	1.0	949.0	7.0
08	64.0	851.0	1.0	41.0
09	953.0	4.0	0.0	0.0
10	956.0	0.0	0.0	1.0
11	4.0	268.0	98.0	587.0
12	364.0	301.0	157.0	135.0

PFM

	A	C	G	T
01	0.257	0.074	0.318	0.351
02	0.422	0.115	0.443	0.02
03	0.002	0.001	0.001	0.996
04	0.001	0.001	0.237	0.761
05	0.311	0.004	0.53	0.155
06	0.083	0.409	0.054	0.455
07	0.0	0.001	0.992	0.007
08	0.067	0.889	0.001	0.043
09	0.996	0.004	0.0	0.0
10	0.999	0.0	0.0	0.001
11	0.004	0.28	0.102	0.613
12	0.38	0.315	0.164	0.141

PWM

	A	C	G	T
01	0.028	-1.198	0.238	0.338
02	0.521	-0.769	0.569	-2.454
03	-4.172	-4.486	-4.486	1.377
04	-4.486	-4.486	-0.052	1.108
05	0.218	-3.741	0.747	-0.476
06	-1.094	0.488	-1.501	0.595
07	-4.945	-4.486	1.373	-3.32
08	-1.299	1.264	-4.486	-1.73
09	1.377	-3.741	-4.945	-4.945
10	1.38	-4.945	-4.945	-4.486
11	-3.741	0.113	-0.882	0.893
12	0.417	0.228	-0.418	-0.567

Standard thresholds

P-value	Threshold
0.001	3.30973
0.0005	4.574465
0.0001	7.38267