CEBPD.H13INVITRO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CEBPD.H13INVITRO.0.P.B
Gene (human)	CEBPD (GeneCards)
Gene synonyms (human)
Gene (mouse)	Cebpd
Gene synonyms (mouse)	Crp3
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	dRTTGCdYAAYh
GC content	40.25%
Information content (bits; total / per base)	13.229 / 1.102
Data sources	ChIP-Seq
Aligned words	1000
Previous names	CEBPD.H12INVITRO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (14)	0.845	0.983	0.802	0.952	0.813	0.972	3.221	4.65	358.163	780.125
Mouse	7 (49)	0.97	0.976	0.925	0.945	0.932	0.947	3.685	3.923	433.292	542.77

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.993	0.988	0.99	0.984	0.967	0.961
Overall, 4 experiments	best	0.996	0.993	0.994	0.99	0.983	0.974
Methyl HT-SELEX, 1 experiments	median	0.994	0.989	0.991	0.984	0.983	0.974
Methyl HT-SELEX, 1 experiments	best	0.994	0.989	0.991	0.984	0.983	0.974
Non-Methyl HT-SELEX, 3 experiments	median	0.993	0.988	0.99	0.983	0.951	0.949
Non-Methyl HT-SELEX, 3 experiments	best	0.996	0.993	0.994	0.99	0.982	0.973

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	C/EBP-related {1.1.8} (TFClass)
TF subfamily	CEBP {1.1.8.1} (TFClass)
TFClass ID	TFClass: 1.1.8.1.4
HGNC	HGNC:1835
MGI	MGI:103573
EntrezGene (human)	GeneID:1052 (SSTAR profile)
EntrezGene (mouse)	GeneID:12609 (SSTAR profile)
UniProt ID (human)	CEBPD_HUMAN
UniProt ID (mouse)	CEBPD_MOUSE
UniProt AC (human)	P49716 (TFClass)
UniProt AC (mouse)	Q00322 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 7 mouse
HT-SELEX	3
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	CEBPD.H13INVITRO.0.P.B.pcm
PWM	CEBPD.H13INVITRO.0.P.B.pwm
PFM	CEBPD.H13INVITRO.0.P.B.pfm
Threshold to P-value map	CEBPD.H13INVITRO.0.P.B.thr
Motif in other formats
JASPAR format	CEBPD.H13INVITRO.0.P.B_jaspar_format.txt
MEME format	CEBPD.H13INVITRO.0.P.B_meme_format.meme
Transfac format	CEBPD.H13INVITRO.0.P.B_transfac_format.txt
Homer format	CEBPD.H13INVITRO.0.P.B_homer_format_0.001.txt CEBPD.H13INVITRO.0.P.B_homer_format_0.0005.txt CEBPD.H13INVITRO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	164.0	158.0	324.0	354.0
02	561.0	126.0	277.0	36.0
03	0.0	0.0	0.0	1000.0
04	0.0	0.0	1.0	999.0
05	21.0	0.0	964.0	15.0
06	0.0	1000.0	0.0	0.0
07	516.0	73.0	288.0	123.0
08	165.0	561.0	1.0	273.0
09	766.0	233.0	0.0	1.0
10	1000.0	0.0	0.0	0.0
11	5.0	346.0	81.0	568.0
12	369.0	299.0	98.0	234.0

PFM

	A	C	G	T
01	0.164	0.158	0.324	0.354
02	0.561	0.126	0.277	0.036
03	0.0	0.0	0.0	1.0
04	0.0	0.0	0.001	0.999
05	0.021	0.0	0.964	0.015
06	0.0	1.0	0.0	0.0
07	0.516	0.073	0.288	0.123
08	0.165	0.561	0.001	0.273
09	0.766	0.233	0.0	0.001
10	1.0	0.0	0.0	0.0
11	0.005	0.346	0.081	0.568
12	0.369	0.299	0.098	0.234

PWM

	A	C	G	T
01	-0.418	-0.455	0.258	0.346
02	0.804	-0.678	0.102	-1.898
03	-4.982	-4.982	-4.982	1.381
04	-4.982	-4.982	-4.525	1.38
05	-2.405	-4.982	1.345	-2.711
06	-4.982	1.381	-4.982	-4.982
07	0.721	-1.215	0.141	-0.702
08	-0.412	0.804	-4.525	0.087
09	1.115	-0.07	-4.982	-4.525
10	1.381	-4.982	-4.982	-4.982
11	-3.622	0.323	-1.113	0.817
12	0.387	0.178	-0.926	-0.066

Standard thresholds

P-value	Threshold
0.001	2.827015
0.0005	4.049405
0.0001	7.3944