MotifCGGBP1.H13INVITRO.0.PSGIB.A
Gene (human)CGGBP1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Cggbp1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length26
ConsensusvnnnYTGCCGCCGAMdYYvSSSvvnn
GC content69.08%
Information content (bits; total / per base)21.367 / 0.822
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words350
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 1 (1) 0.88 0.88 0.771 0.771 0.66 0.66 43.824 43.824

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Lysate, 1 experiments median 0.997 0.996 0.992 0.989 0.888 0.901
best 0.997 0.996 0.992 0.989 0.888 0.901

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 168.075 0.914 0.918 0.859
best 372.921 0.964 0.949 0.881
Lysate, 1 experiments median 297.618 0.946 0.935 0.859
best 372.921 0.964 0.949 0.876
GFPIVT, 1 experiments median 114.059 0.892 0.905 0.853
best 187.921 0.898 0.906 0.881

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.644 0.601 0.576 0.562 0.536 0.537
best 0.644 0.601 0.576 0.562 0.536 0.537

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 4 experiments median 0.947 0.244 0.935 0.29
best 0.949 0.257 0.936 0.305
TF superclassYet undefined DNA-binding domains {0} (TFClass)
TF classUncharacterized {0.0} (TFClass)
TF familyUnannotated {0.0.9} (TFClass)
TF subfamily {0.0.9.0} (TFClass)
TFClass IDTFClass: 0.0.9.0.255
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)CGBP1_HUMAN
UniProt ID (mouse)CGBP1_MOUSE
UniProt AC (human)Q9UFW8
(TFClass)
UniProt AC (mouse)Q8BHG9
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 4
PCM
ACGT
0164.5140.5113.531.5
02107.584.579.578.5
0371.071.0136.072.0
0499.054.098.099.0
0547.0212.042.049.0
065.0104.00.0241.0
0760.00.0290.00.0
080.0350.00.00.0
090.0350.00.00.0
100.00.0350.00.0
110.0350.00.00.0
1220.0330.00.00.0
130.00.0350.00.0
14290.052.03.05.0
15201.0116.016.017.0
16120.03.0131.096.0
1730.0170.04.0146.0
1821.0165.025.0139.0
1940.0114.0175.021.0
202.0250.067.031.0
2114.0198.0124.014.0
228.0106.0219.017.0
2398.0168.075.09.0
2491.0116.0136.07.0
2560.7576.75136.7575.75
26101.7585.7548.75113.75
PFM
ACGT
010.1840.4010.3240.09
020.3070.2410.2270.224
030.2030.2030.3890.206
040.2830.1540.280.283
050.1340.6060.120.14
060.0140.2970.00.689
070.1710.00.8290.0
080.01.00.00.0
090.01.00.00.0
100.00.01.00.0
110.01.00.00.0
120.0570.9430.00.0
130.00.01.00.0
140.8290.1490.0090.014
150.5740.3310.0460.049
160.3430.0090.3740.274
170.0860.4860.0110.417
180.060.4710.0710.397
190.1140.3260.50.06
200.0060.7140.1910.089
210.040.5660.3540.04
220.0230.3030.6260.049
230.280.480.2140.026
240.260.3310.3890.02
250.1740.2190.3910.216
260.2910.2450.1390.325
PWM
ACGT
01-0.2990.4670.256-0.993
020.203-0.034-0.094-0.107
03-0.205-0.2050.435-0.191
040.122-0.4720.1120.122
05-0.6070.875-0.716-0.567
06-2.6220.17-4.1071.003
07-0.37-4.1071.187-4.107
08-4.1071.374-4.107-4.107
09-4.1071.374-4.107-4.107
10-4.107-4.1071.374-4.107
11-4.1071.374-4.107-4.107
12-1.4221.315-4.107-4.107
13-4.107-4.1071.374-4.107
141.187-0.509-2.992-2.622
150.8220.278-1.628-1.572
160.311-2.9920.3980.091
17-1.0390.656-2.790.505
18-1.3760.627-1.2120.457
19-0.7630.2610.685-1.376
20-3.2461.039-0.262-1.008
21-1.750.8070.344-1.75
22-2.2410.1890.907-1.572
230.1120.644-0.151-2.14
240.0390.2780.435-2.352
25-0.358-0.1290.441-0.142
260.149-0.02-0.5720.259
Standard thresholds
P-value Threshold
0.001 -0.90504
0.0005 0.68526
0.0001 4.04376