| Motif | CPEB1.H13INVIVO.0.S.D |
| Gene (human) | CPEB1 (GeneCards) |
| Gene synonyms (human) | CPEB |
| Gene (mouse) | Cpeb1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | CPEB1.H13INVIVO.0.S.D |
| Gene (human) | CPEB1 (GeneCards) |
| Gene synonyms (human) | CPEB |
| Gene (mouse) | Cpeb1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | nTTTTAYn |
| GC content | 16.13% |
| Information content (bits; total / per base) | 9.904 / 1.238 |
| Data sources | HT-SELEX |
| Aligned words | 8085 |
| Previous names | CPEB1.H12INVIVO.0.S.D |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.861 | 0.81 | 0.717 | 0.706 | 0.596 | 0.619 |
| best | 0.906 | 0.852 | 0.774 | 0.754 | 0.622 | 0.649 | |
| TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
| TF class | Uncharacterized {0.0} (TFClass) |
| TF family | Unannotated {0.0.9} (TFClass) |
| TF subfamily | {0.0.9.0} (TFClass) |
| TFClass ID | TFClass: 0.0.9.0.8 |
| HGNC | HGNC:21744 |
| MGI | MGI:108442 |
| EntrezGene (human) | GeneID:64506 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:12912 (SSTAR profile) |
| UniProt ID (human) | CPEB1_HUMAN |
| UniProt ID (mouse) | CPEB1_MOUSE |
| UniProt AC (human) | Q9BZB8 (TFClass) |
| UniProt AC (mouse) | P70166 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | CPEB1.H13INVIVO.0.S.D.pcm |
| PWM | CPEB1.H13INVIVO.0.S.D.pwm |
| PFM | CPEB1.H13INVIVO.0.S.D.pfm |
| Threshold to P-value map | CPEB1.H13INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | CPEB1.H13INVIVO.0.S.D_jaspar_format.txt |
| MEME format | CPEB1.H13INVIVO.0.S.D_meme_format.meme |
| Transfac format | CPEB1.H13INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1171.0 | 2007.0 | 1973.0 | 2934.0 |
| 02 | 42.0 | 313.0 | 245.0 | 7485.0 |
| 03 | 122.0 | 125.0 | 0.0 | 7838.0 |
| 04 | 0.0 | 1.0 | 0.0 | 8084.0 |
| 05 | 0.0 | 3.0 | 0.0 | 8082.0 |
| 06 | 8085.0 | 0.0 | 0.0 | 0.0 |
| 07 | 718.0 | 1277.0 | 835.0 | 5255.0 |
| 08 | 1846.25 | 1907.25 | 1748.25 | 2583.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.145 | 0.248 | 0.244 | 0.363 |
| 02 | 0.005 | 0.039 | 0.03 | 0.926 |
| 03 | 0.015 | 0.015 | 0.0 | 0.969 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.089 | 0.158 | 0.103 | 0.65 |
| 08 | 0.228 | 0.236 | 0.216 | 0.32 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.545 | -0.007 | -0.024 | 0.372 |
| 02 | -3.823 | -1.859 | -2.102 | 1.308 |
| 03 | -2.79 | -2.766 | -6.802 | 1.354 |
| 04 | -6.802 | -6.434 | -6.802 | 1.385 |
| 05 | -6.802 | -5.954 | -6.802 | 1.385 |
| 06 | 1.385 | -6.802 | -6.802 | -6.802 |
| 07 | -1.033 | -0.459 | -0.882 | 0.955 |
| 08 | -0.09 | -0.058 | -0.145 | 0.245 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.959425 |
| 0.0005 | 6.17067 |
| 0.0001 | 7.7154 |