CPXCR1.H13INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CPXCR1.H13INVIVO.0.P.C
Gene (human)	CPXCR1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Cpxcr1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	15
Consensus	vMCYbSvbCWCCdbb
GC content	70.23%
Information content (bits; total / per base)	11.859 / 0.791
Data sources	ChIP-Seq
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	1 (2)	0.785	0.79	0.623	0.629	0.794	0.799	122.369	138.06

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	Other {2.3.2.4} (TFClass)
TFClass ID	TFClass: 2.3.2.4.255
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	CPXCR_HUMAN
UniProt ID (mouse)	CPXCR_MOUSE
UniProt AC (human)	Q8N123 (TFClass)
UniProt AC (mouse)	Q3V0P1 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	CPXCR1.H13INVIVO.0.P.C.pcm
PWM	CPXCR1.H13INVIVO.0.P.C.pwm
PFM	CPXCR1.H13INVIVO.0.P.C.pfm
Threshold to P-value map	CPXCR1.H13INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	CPXCR1.H13INVIVO.0.P.C_jaspar_format.txt
MEME format	CPXCR1.H13INVIVO.0.P.C_meme_format.meme
Transfac format	CPXCR1.H13INVIVO.0.P.C_transfac_format.txt
Homer format	CPXCR1.H13INVIVO.0.P.C_homer_format_0.001.txt CPXCR1.H13INVIVO.0.P.C_homer_format_0.0005.txt CPXCR1.H13INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	215.0	73.0	168.0	44.0
02	104.0	344.0	40.0	12.0
03	3.0	493.0	0.0	4.0
04	40.0	298.0	3.0	159.0
05	15.0	174.0	134.0	177.0
06	51.0	66.0	339.0	44.0
07	137.0	183.0	114.0	66.0
08	4.0	174.0	144.0	178.0
09	10.0	469.0	2.0	19.0
10	62.0	53.0	13.0	372.0
11	1.0	497.0	2.0	0.0
12	1.0	497.0	2.0	0.0
13	162.0	69.0	176.0	93.0
14	9.0	196.0	189.0	106.0
15	43.0	241.0	114.0	102.0

PFM

	A	C	G	T
01	0.43	0.146	0.336	0.088
02	0.208	0.688	0.08	0.024
03	0.006	0.986	0.0	0.008
04	0.08	0.596	0.006	0.318
05	0.03	0.348	0.268	0.354
06	0.102	0.132	0.678	0.088
07	0.274	0.366	0.228	0.132
08	0.008	0.348	0.288	0.356
09	0.02	0.938	0.004	0.038
10	0.124	0.106	0.026	0.744
11	0.002	0.994	0.004	0.0
12	0.002	0.994	0.004	0.0
13	0.324	0.138	0.352	0.186
14	0.018	0.392	0.378	0.212
15	0.086	0.482	0.228	0.204

PWM

	A	C	G	T
01	0.537	-0.529	0.293	-1.022
02	-0.181	1.004	-1.114	-2.234
03	-3.325	1.363	-4.4	-3.126
04	-1.114	0.862	-3.325	0.238
05	-2.034	0.327	0.069	0.344
06	-0.879	-0.628	0.99	-1.022
07	0.091	0.377	-0.091	-0.628
08	-3.126	0.327	0.14	0.35
09	-2.394	1.313	-3.573	-1.818
10	-0.689	-0.841	-2.163	1.082
11	-3.903	1.371	-3.573	-4.4
12	-3.903	1.371	-3.573	-4.4
13	0.256	-0.584	0.339	-0.291
14	-2.484	0.445	0.409	-0.163
15	-1.044	0.651	-0.091	-0.201

Standard thresholds

P-value	Threshold
0.001	4.22696
0.0005	5.27926
0.0001	7.35971