CTCFL.H13INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	CTCFL.H13INVIVO.0.P.B
Gene (human)	CTCFL (GeneCards)
Gene synonyms (human)	BORIS
Gene (mouse)	Ctcfl
Gene synonyms (mouse)	Boris
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	16
Consensus	CCdShAGGKGGCRShv
GC content	75.3%
Information content (bits; total / per base)	15.631 / 0.977
Data sources	ChIP-Seq
Aligned words	940
Previous names	CTCFL.H12INVIVO.0.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	17 (117)	0.945	0.974	0.897	0.951	0.928	0.963	4.833	5.377	512.796	700.229
Mouse	6 (34)	0.938	0.981	0.9	0.967	0.899	0.965	4.248	5.993	435.78	714.638

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.37	2.198	0.17	0.038

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	CTCF-like {2.3.3.50} (TFClass)
TFClass ID	TFClass: 2.3.3.50.2
HGNC	HGNC:16234
MGI	MGI:3652571
EntrezGene (human)	GeneID:140690 (SSTAR profile)
EntrezGene (mouse)	GeneID:664799 (SSTAR profile)
UniProt ID (human)	CTCFL_HUMAN
UniProt ID (mouse)	CTCFL_MOUSE
UniProt AC (human)	Q8NI51 (TFClass)
UniProt AC (mouse)	A2APF3 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	17 human, 6 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	CTCFL.H13INVIVO.0.P.B.pcm
PWM	CTCFL.H13INVIVO.0.P.B.pwm
PFM	CTCFL.H13INVIVO.0.P.B.pfm
Threshold to P-value map	CTCFL.H13INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	CTCFL.H13INVIVO.0.P.B_jaspar_format.txt
MEME format	CTCFL.H13INVIVO.0.P.B_meme_format.meme
Transfac format	CTCFL.H13INVIVO.0.P.B_transfac_format.txt
Homer format	CTCFL.H13INVIVO.0.P.B_homer_format_0.001.txt CTCFL.H13INVIVO.0.P.B_homer_format_0.0005.txt CTCFL.H13INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	58.0	788.0	74.0	20.0
02	20.0	897.0	15.0	8.0
03	422.0	74.0	326.0	118.0
04	84.0	525.0	308.0	23.0
05	121.0	466.0	74.0	279.0
06	806.0	40.0	59.0	35.0
07	6.0	5.0	929.0	0.0
08	240.0	7.0	689.0	4.0
09	53.0	28.0	705.0	154.0
10	8.0	1.0	923.0	8.0
11	19.0	27.0	869.0	25.0
12	60.0	852.0	10.0	18.0
13	174.0	35.0	699.0	32.0
14	48.0	635.0	184.0	73.0
15	136.0	407.0	99.0	298.0
16	270.0	259.0	316.0	95.0

PFM

	A	C	G	T
01	0.062	0.838	0.079	0.021
02	0.021	0.954	0.016	0.009
03	0.449	0.079	0.347	0.126
04	0.089	0.559	0.328	0.024
05	0.129	0.496	0.079	0.297
06	0.857	0.043	0.063	0.037
07	0.006	0.005	0.988	0.0
08	0.255	0.007	0.733	0.004
09	0.056	0.03	0.75	0.164
10	0.009	0.001	0.982	0.009
11	0.02	0.029	0.924	0.027
12	0.064	0.906	0.011	0.019
13	0.185	0.037	0.744	0.034
14	0.051	0.676	0.196	0.078
15	0.145	0.433	0.105	0.317
16	0.287	0.276	0.336	0.101

PWM

	A	C	G	T
01	-1.377	1.205	-1.14	-2.389
02	-2.389	1.334	-2.651	-3.194
03	0.582	-1.14	0.325	-0.682
04	-1.016	0.8	0.269	-2.26
05	-0.657	0.681	-1.14	0.17
06	1.227	-1.736	-1.361	-1.864
07	-3.424	-3.563	1.369	-4.929
08	0.021	-3.302	1.071	-3.724
09	-1.465	-2.075	1.094	-0.419
10	-3.194	-4.469	1.363	-3.194
11	-2.436	-2.11	1.302	-2.182
12	-1.344	1.283	-3.006	-2.486
13	-0.298	-1.864	1.085	-1.949
14	-1.561	0.989	-0.243	-1.153
15	-0.542	0.546	-0.855	0.236
16	0.138	0.097	0.294	-0.895

Standard thresholds

P-value	Threshold
0.001	2.79726
0.0005	3.96791
0.0001	6.42051