DACH1.H13RSNP.0.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	DACH1.H13RSNP.0.S.D
Gene (human)	DACH1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Dach1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	dCAWThGTCATWAYdvh
GC content	34.91%
Information content (bits; total / per base)	16.924 / 0.996
Data sources	HT-SELEX
Aligned words	9458
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.98	0.98	0.774	0.798	0.634	0.675
overall, 3 experiments	best	1.0	0.999	0.998	0.998	0.973	0.97
Lysate, 2 experiments	median	0.877	0.883	0.704	0.727	0.601	0.633
Lysate, 2 experiments	best	0.98	0.98	0.774	0.798	0.634	0.675
GFPIVT, 1 experiments	median	1.0	0.999	0.998	0.998	0.973	0.97
GFPIVT, 1 experiments	best	1.0	0.999	0.998	0.998	0.973	0.97

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	DACH {0.0.9.1} (TFClass)
TFClass ID	TFClass: 0.0.9.1.1
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	DACH1_HUMAN
UniProt ID (mouse)	DACH1_MOUSE
UniProt AC (human)	Q9UI36 (TFClass)
UniProt AC (mouse)	Q9QYB2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	3 overall: 2 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	DACH1.H13RSNP.0.S.D.pcm
PWM	DACH1.H13RSNP.0.S.D.pwm
PFM	DACH1.H13RSNP.0.S.D.pfm
Threshold to P-value map	DACH1.H13RSNP.0.S.D.thr
Motif in other formats
JASPAR format	DACH1.H13RSNP.0.S.D_jaspar_format.txt
MEME format	DACH1.H13RSNP.0.S.D_meme_format.meme
Transfac format	DACH1.H13RSNP.0.S.D_transfac_format.txt
Homer format	DACH1.H13RSNP.0.S.D_homer_format_0.001.txt DACH1.H13RSNP.0.S.D_homer_format_0.0005.txt DACH1.H13RSNP.0.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4674.0	1270.0	1969.0	1545.0
02	517.75	7767.75	853.75	318.75
03	9375.0	10.0	52.0	21.0
04	5234.0	189.0	1874.0	2161.0
05	1609.0	181.0	8.0	7660.0
06	1349.0	4630.0	448.0	3031.0
07	156.0	22.0	9278.0	2.0
08	66.0	15.0	703.0	8674.0
09	604.0	8835.0	5.0	14.0
10	8650.0	597.0	121.0	90.0
11	102.0	157.0	46.0	9153.0
12	5605.0	549.0	777.0	2527.0
13	8700.0	186.0	333.0	239.0
14	963.0	982.0	648.0	6865.0
15	860.0	637.0	3129.0	4832.0
16	4354.75	2640.75	1542.75	919.75
17	1952.0	4130.0	1544.0	1832.0

PFM

	A	C	G	T
01	0.494	0.134	0.208	0.163
02	0.055	0.821	0.09	0.034
03	0.991	0.001	0.005	0.002
04	0.553	0.02	0.198	0.228
05	0.17	0.019	0.001	0.81
06	0.143	0.49	0.047	0.32
07	0.016	0.002	0.981	0.0
08	0.007	0.002	0.074	0.917
09	0.064	0.934	0.001	0.001
10	0.915	0.063	0.013	0.01
11	0.011	0.017	0.005	0.968
12	0.593	0.058	0.082	0.267
13	0.92	0.02	0.035	0.025
14	0.102	0.104	0.069	0.726
15	0.091	0.067	0.331	0.511
16	0.46	0.279	0.163	0.097
17	0.206	0.437	0.163	0.194

PWM

	A	C	G	T
01	0.681	-0.621	-0.183	-0.425
02	-1.515	1.189	-1.017	-1.998
03	1.377	-5.261	-3.775	-4.621
04	0.794	-2.516	-0.232	-0.09
05	-0.384	-2.558	-5.438	1.175
06	-0.56	0.672	-1.659	0.248
07	-2.705	-4.579	1.366	-6.313
08	-3.546	-4.919	-1.211	1.299
09	-1.362	1.317	-5.783	-4.979
10	1.296	-1.374	-2.955	-3.244
11	-3.122	-2.699	-3.892	1.353
12	0.863	-1.457	-1.111	0.066
13	1.302	-2.531	-1.954	-2.283
14	-0.897	-0.877	-1.292	1.065
15	-1.01	-1.309	0.28	0.714
16	0.61	0.11	-0.426	-0.943
17	-0.192	0.557	-0.426	-0.255

Standard thresholds

P-value	Threshold
0.001	1.65786
0.0005	3.01711
0.0001	5.84256