| Motif | DMTF1.H13INVITRO.0.PSGIB.A |
| Gene (human) | DMTF1 (GeneCards) |
| Gene synonyms (human) | DMP1 |
| Gene (mouse) | Dmtf1 |
| Gene synonyms (mouse) | Dmp1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | DMTF1.H13INVITRO.0.PSGIB.A |
| Gene (human) | DMTF1 (GeneCards) |
| Gene synonyms (human) | DMP1 |
| Gene (mouse) | Dmtf1 |
| Gene synonyms (mouse) | Dmp1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 16 |
| Consensus | ndRRKRCCCGGATGTd |
| GC content | 52.78% |
| Information content (bits; total / per base) | 19.709 / 1.232 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM |
| Aligned words | 2275 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 2 (2) | 0.916 | 0.92 | 0.879 | 0.888 | 0.758 | 0.78 | 146.961 | 173.921 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Lysate, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| GFPIVT, 1 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 2 experiments | median | 748.165 | 0.983 | 0.985 | 0.984 |
| best | 1122.509 | 0.994 | 0.992 | 0.986 | |
| Lysate, 1 experiments | median | 748.165 | 0.98 | 0.986 | 0.984 |
| best | 1122.509 | 0.988 | 0.988 | 0.984 | |
| GFPIVT, 1 experiments | median | 742.479 | 0.988 | 0.984 | 0.984 |
| best | 1070.699 | 0.994 | 0.992 | 0.986 | |
| SMiLE-Seq benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.575 | 0.581 | 0.53 | 0.54 | 0.512 | 0.522 |
| best | 0.614 | 0.609 | 0.55 | 0.557 | 0.519 | 0.531 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.764 | 0.07 | 0.751 | 0.088 |
| best | 0.822 | 0.079 | 0.849 | 0.09 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Tryptophan cluster factors {3.5} (TFClass) |
| TF family | Myb/SANT domain {3.5.1} (TFClass) |
| TF subfamily | DMTF-like {3.5.1.7} (TFClass) |
| TFClass ID | TFClass: 3.5.1.7.1 |
| HGNC | HGNC:14603 |
| MGI | MGI:1344415 |
| EntrezGene (human) | GeneID:9988 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:23857 (SSTAR profile) |
| UniProt ID (human) | DMTF1_HUMAN |
| UniProt ID (mouse) | DMTF1_MOUSE |
| UniProt AC (human) | Q9Y222 (TFClass) |
| UniProt AC (mouse) | Q8CE22 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT |
| Genomic HT-SELEX | 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT |
| SMiLE-Seq | 2 |
| PBM | 4 |
| PCM | DMTF1.H13INVITRO.0.PSGIB.A.pcm |
| PWM | DMTF1.H13INVITRO.0.PSGIB.A.pwm |
| PFM | DMTF1.H13INVITRO.0.PSGIB.A.pfm |
| Threshold to P-value map | DMTF1.H13INVITRO.0.PSGIB.A.thr |
| Motif in other formats | |
| JASPAR format | DMTF1.H13INVITRO.0.PSGIB.A_jaspar_format.txt |
| MEME format | DMTF1.H13INVITRO.0.PSGIB.A_meme_format.meme |
| Transfac format | DMTF1.H13INVITRO.0.PSGIB.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 671.75 | 487.75 | 575.75 | 539.75 |
| 02 | 1132.0 | 323.0 | 395.0 | 425.0 |
| 03 | 1287.0 | 184.0 | 609.0 | 195.0 |
| 04 | 522.0 | 84.0 | 1293.0 | 376.0 |
| 05 | 187.0 | 66.0 | 405.0 | 1617.0 |
| 06 | 1784.0 | 149.0 | 248.0 | 94.0 |
| 07 | 10.0 | 2236.0 | 13.0 | 16.0 |
| 08 | 14.0 | 2254.0 | 7.0 | 0.0 |
| 09 | 2.0 | 2271.0 | 2.0 | 0.0 |
| 10 | 0.0 | 0.0 | 2275.0 | 0.0 |
| 11 | 0.0 | 0.0 | 2266.0 | 9.0 |
| 12 | 2275.0 | 0.0 | 0.0 | 0.0 |
| 13 | 0.0 | 1.0 | 0.0 | 2274.0 |
| 14 | 3.0 | 6.0 | 2264.0 | 2.0 |
| 15 | 137.0 | 176.0 | 112.0 | 1850.0 |
| 16 | 999.75 | 167.75 | 340.75 | 766.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.295 | 0.214 | 0.253 | 0.237 |
| 02 | 0.498 | 0.142 | 0.174 | 0.187 |
| 03 | 0.566 | 0.081 | 0.268 | 0.086 |
| 04 | 0.229 | 0.037 | 0.568 | 0.165 |
| 05 | 0.082 | 0.029 | 0.178 | 0.711 |
| 06 | 0.784 | 0.065 | 0.109 | 0.041 |
| 07 | 0.004 | 0.983 | 0.006 | 0.007 |
| 08 | 0.006 | 0.991 | 0.003 | 0.0 |
| 09 | 0.001 | 0.998 | 0.001 | 0.0 |
| 10 | 0.0 | 0.0 | 1.0 | 0.0 |
| 11 | 0.0 | 0.0 | 0.996 | 0.004 |
| 12 | 1.0 | 0.0 | 0.0 | 0.0 |
| 13 | 0.0 | 0.0 | 0.0 | 1.0 |
| 14 | 0.001 | 0.003 | 0.995 | 0.001 |
| 15 | 0.06 | 0.077 | 0.049 | 0.813 |
| 16 | 0.439 | 0.074 | 0.15 | 0.337 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.166 | -0.153 | 0.012 | -0.052 |
| 02 | 0.687 | -0.563 | -0.363 | -0.29 |
| 03 | 0.815 | -1.121 | 0.068 | -1.064 |
| 04 | -0.085 | -1.893 | 0.819 | -0.412 |
| 05 | -1.105 | -2.128 | -0.338 | 1.043 |
| 06 | 1.141 | -1.33 | -0.826 | -1.783 |
| 07 | -3.868 | 1.366 | -3.643 | -3.46 |
| 08 | -3.578 | 1.374 | -4.157 | -5.688 |
| 09 | -4.978 | 1.382 | -4.978 | -5.688 |
| 10 | -5.688 | -5.688 | 1.384 | -5.688 |
| 11 | -5.688 | -5.688 | 1.38 | -3.955 |
| 12 | 1.384 | -5.688 | -5.688 | -5.688 |
| 13 | -5.688 | -5.271 | -5.688 | 1.383 |
| 14 | -4.751 | -4.276 | 1.379 | -4.978 |
| 15 | -1.413 | -1.165 | -1.611 | 1.177 |
| 16 | 0.563 | -1.213 | -0.51 | 0.298 |
| P-value | Threshold |
|---|---|
| 0.001 | -2.18774 |
| 0.0005 | -0.39264 |
| 0.0001 | 3.51916 |