DNTTIP1.H13CORE.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	DNTTIP1.H13CORE.0.PSG.A
Gene (human)	DNTTIP1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Dnttip1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	RvRYGCAMdvv
GC content	59.11%
Information content (bits; total / per base)	8.255 / 0.75
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	500
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.722	0.728	0.537	0.544	0.552	0.559	18.304	24.721

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 2 experiments	median	0.677	0.619	0.644	0.598	0.607	0.577
overall, 2 experiments	best	0.734	0.664	0.695	0.636	0.649	0.608
Lysate, 1 experiments	median	0.734	0.664	0.695	0.636	0.649	0.608
Lysate, 1 experiments	best	0.734	0.664	0.695	0.636	0.649	0.608
GFPIVT, 1 experiments	median	0.619	0.574	0.593	0.559	0.566	0.545
GFPIVT, 1 experiments	best	0.619	0.574	0.593	0.559	0.566	0.545

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 1 experiments	median	124.041	0.758	0.931	0.853
Lysate, 1 experiments	best	124.041	0.758	0.931	0.853

TF superclass	beta-Sheet binding to DNA {8} (TFClass)
TF class	A.T hook factors {8.2} (TFClass)
TF family	Unannotated {8.2.255} (TFClass)
TF subfamily	{8.2.255.0} (TFClass)
TFClass ID	TFClass: 8.2.255.0.2
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	TDIF1_HUMAN
UniProt ID (mouse)	TDIF1_MOUSE
UniProt AC (human)	Q9H147 (TFClass)
UniProt AC (mouse)	Q99LB0 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	DNTTIP1.H13CORE.0.PSG.A.pcm
PWM	DNTTIP1.H13CORE.0.PSG.A.pwm
PFM	DNTTIP1.H13CORE.0.PSG.A.pfm
Threshold to P-value map	DNTTIP1.H13CORE.0.PSG.A.thr
Motif in other formats
JASPAR format	DNTTIP1.H13CORE.0.PSG.A_jaspar_format.txt
MEME format	DNTTIP1.H13CORE.0.PSG.A_meme_format.meme
Transfac format	DNTTIP1.H13CORE.0.PSG.A_transfac_format.txt
Homer format	DNTTIP1.H13CORE.0.PSG.A_homer_format_0.001.txt DNTTIP1.H13CORE.0.PSG.A_homer_format_0.0005.txt DNTTIP1.H13CORE.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	121.0	31.0	314.0	34.0
02	129.0	248.0	100.0	23.0
03	298.0	32.0	157.0	13.0
04	64.0	171.0	14.0	251.0
05	2.0	5.0	486.0	7.0
06	8.0	483.0	4.0	5.0
07	443.0	5.0	29.0	23.0
08	141.0	310.0	25.0	24.0
09	267.0	44.0	120.0	69.0
10	61.0	165.0	232.0	42.0
11	191.0	129.0	147.0	33.0

PFM

	A	C	G	T
01	0.242	0.062	0.628	0.068
02	0.258	0.496	0.2	0.046
03	0.596	0.064	0.314	0.026
04	0.128	0.342	0.028	0.502
05	0.004	0.01	0.972	0.014
06	0.016	0.966	0.008	0.01
07	0.886	0.01	0.058	0.046
08	0.282	0.62	0.05	0.048
09	0.534	0.088	0.24	0.138
10	0.122	0.33	0.464	0.084
11	0.382	0.258	0.294	0.066

PWM

	A	C	G	T
01	-0.032	-1.358	0.914	-1.27
02	0.031	0.679	-0.22	-1.64
03	0.862	-1.328	0.225	-2.163
04	-0.658	0.31	-2.096	0.691
05	-3.573	-2.961	1.349	-2.694
06	-2.584	1.343	-3.126	-2.961
07	1.256	-2.961	-1.421	-1.64
08	0.119	0.901	-1.561	-1.6
09	0.752	-1.022	-0.04	-0.584
10	-0.705	0.275	0.613	-1.067
11	0.42	0.031	0.16	-1.298

Standard thresholds

P-value	Threshold
0.001	5.08197
0.0005	5.79749
0.0001	7.16373