DNTTIP1.H13INVITRO.0.PSG.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	DNTTIP1.H13INVITRO.0.PSG.A
Gene (human)	DNTTIP1 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Dnttip1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	16
Consensus	nhnhSCATGCAYvnbn
GC content	52.63%
Information content (bits; total / per base)	12.305 / 0.769
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX
Aligned words	333
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.627	0.635	0.462	0.469	0.437	0.443	17.377	22.201

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 2 experiments	median	0.718	0.654	0.677	0.626	0.632	0.597
overall, 2 experiments	best	0.782	0.711	0.727	0.67	0.668	0.63
Lysate, 1 experiments	median	0.782	0.711	0.727	0.67	0.668	0.63
Lysate, 1 experiments	best	0.782	0.711	0.727	0.67	0.668	0.63
GFPIVT, 1 experiments	median	0.654	0.597	0.627	0.582	0.595	0.565
GFPIVT, 1 experiments	best	0.654	0.597	0.627	0.582	0.595	0.565

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 1 experiments	median	144.31	0.631	0.921	0.818
Lysate, 1 experiments	best	144.31	0.631	0.921	0.818

TF superclass	beta-Sheet binding to DNA {8} (TFClass)
TF class	A.T hook factors {8.2} (TFClass)
TF family	Unannotated {8.2.255} (TFClass)
TF subfamily	{8.2.255.0} (TFClass)
TFClass ID	TFClass: 8.2.255.0.2
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	TDIF1_HUMAN
UniProt ID (mouse)	TDIF1_MOUSE
UniProt AC (human)	Q9H147 (TFClass)
UniProt AC (mouse)	Q99LB0 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 1 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	DNTTIP1.H13INVITRO.0.PSG.A.pcm
PWM	DNTTIP1.H13INVITRO.0.PSG.A.pwm
PFM	DNTTIP1.H13INVITRO.0.PSG.A.pfm
Threshold to P-value map	DNTTIP1.H13INVITRO.0.PSG.A.thr
Motif in other formats
JASPAR format	DNTTIP1.H13INVITRO.0.PSG.A_jaspar_format.txt
MEME format	DNTTIP1.H13INVITRO.0.PSG.A_meme_format.meme
Transfac format	DNTTIP1.H13INVITRO.0.PSG.A_transfac_format.txt
Homer format	DNTTIP1.H13INVITRO.0.PSG.A_homer_format_0.001.txt DNTTIP1.H13INVITRO.0.PSG.A_homer_format_0.0005.txt DNTTIP1.H13INVITRO.0.PSG.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	81.0	103.0	78.0	71.0
02	91.0	147.0	47.0	48.0
03	116.0	78.0	56.0	83.0
04	55.0	90.0	33.0	155.0
05	32.0	110.0	176.0	15.0
06	25.0	290.0	17.0	1.0
07	269.0	0.0	22.0	42.0
08	0.0	0.0	0.0	333.0
09	0.0	0.0	333.0	0.0
10	0.0	333.0	0.0	0.0
11	329.0	3.0	1.0	0.0
12	54.0	117.0	1.0	161.0
13	49.0	179.0	73.0	32.0
14	106.0	111.0	55.0	61.0
15	41.0	122.0	44.0	126.0
16	84.0	102.0	83.0	64.0

PFM

	A	C	G	T
01	0.243	0.309	0.234	0.213
02	0.273	0.441	0.141	0.144
03	0.348	0.234	0.168	0.249
04	0.165	0.27	0.099	0.465
05	0.096	0.33	0.529	0.045
06	0.075	0.871	0.051	0.003
07	0.808	0.0	0.066	0.126
08	0.0	0.0	0.0	1.0
09	0.0	0.0	1.0	0.0
10	0.0	1.0	0.0	0.0
11	0.988	0.009	0.003	0.0
12	0.162	0.351	0.003	0.483
13	0.147	0.538	0.219	0.096
14	0.318	0.333	0.165	0.183
15	0.123	0.366	0.132	0.378
16	0.252	0.306	0.249	0.192

PWM

	A	C	G	T
01	-0.027	0.21	-0.064	-0.156
02	0.088	0.561	-0.559	-0.538
03	0.327	-0.064	-0.388	-0.003
04	-0.406	0.077	-0.9	0.614
05	-0.929	0.274	0.74	-1.639
06	-1.164	1.236	-1.524	-3.542
07	1.161	-4.066	-1.284	-0.667
08	-4.066	-4.066	-4.066	1.373
09	-4.066	-4.066	1.373	-4.066
10	-4.066	1.373	-4.066	-4.066
11	1.361	-2.946	-3.542	-4.066
12	-0.424	0.335	-3.542	0.651
13	-0.518	0.756	-0.129	-0.929
14	0.238	0.283	-0.406	-0.305
15	-0.691	0.377	-0.622	0.409
16	0.009	0.2	-0.003	-0.258

Standard thresholds

P-value	Threshold
0.001	4.01361
0.0005	5.17081
0.0001	7.44901