DPF1.H13INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	DPF1.H13INVIVO.0.SM.D
Gene (human)	DPF1 (GeneCards)
Gene synonyms (human)	BAF45B, NEUD4
Gene (mouse)	Dpf1
Gene synonyms (mouse)	Baf45b, Neud4
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	ndbMMCCTATAKvn
GC content	46.87%
Information content (bits; total / per base)	13.91 / 0.994
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9954
Previous names	DPF1.H12INVIVO.0.SM.D

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.946	0.936	0.768	0.779	0.635	0.666
Overall, 2 experiments	best	0.96	0.949	0.798	0.803	0.654	0.683
Methyl HT-SELEX, 1 experiments	median	0.932	0.924	0.738	0.755	0.616	0.649
Methyl HT-SELEX, 1 experiments	best	0.932	0.924	0.738	0.755	0.616	0.649
Non-Methyl HT-SELEX, 1 experiments	median	0.96	0.949	0.798	0.803	0.654	0.683
Non-Methyl HT-SELEX, 1 experiments	best	0.96	0.949	0.798	0.803	0.654	0.683

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	Unannotated {0.0.9} (TFClass)
TF subfamily	{0.0.9.0} (TFClass)
TFClass ID	TFClass: 0.0.9.0.7
HGNC	HGNC:20225
MGI	MGI:1352748
EntrezGene (human)	GeneID:8193 (SSTAR profile)
EntrezGene (mouse)	GeneID:29861 (SSTAR profile)
UniProt ID (human)	DPF1_HUMAN
UniProt ID (mouse)	DPF1_MOUSE
UniProt AC (human)	Q92782 (TFClass)
UniProt AC (mouse)	Q9QX66 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	DPF1.H13INVIVO.0.SM.D.pcm
PWM	DPF1.H13INVIVO.0.SM.D.pwm
PFM	DPF1.H13INVIVO.0.SM.D.pfm
Threshold to P-value map	DPF1.H13INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	DPF1.H13INVIVO.0.SM.D_jaspar_format.txt
MEME format	DPF1.H13INVIVO.0.SM.D_meme_format.meme
Transfac format	DPF1.H13INVIVO.0.SM.D_transfac_format.txt
Homer format	DPF1.H13INVIVO.0.SM.D_homer_format_0.001.txt DPF1.H13INVIVO.0.SM.D_homer_format_0.0005.txt DPF1.H13INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2075.75	2697.75	2475.75	2704.75
02	2327.25	1275.25	3899.25	2452.25
03	1117.0	1137.0	3967.0	3733.0
04	1415.0	7305.0	301.0	933.0
05	4952.0	2751.0	2182.0	69.0
06	11.0	9917.0	9.0	17.0
07	195.0	9421.0	304.0	34.0
08	0.0	0.0	0.0	9954.0
09	9921.0	31.0	2.0	0.0
10	7.0	34.0	0.0	9913.0
11	9185.0	33.0	734.0	2.0
12	30.0	863.0	7103.0	1958.0
13	4917.25	2562.25	2076.25	398.25
14	2898.5	2049.5	2192.5	2813.5

PFM

	A	C	G	T
01	0.209	0.271	0.249	0.272
02	0.234	0.128	0.392	0.246
03	0.112	0.114	0.399	0.375
04	0.142	0.734	0.03	0.094
05	0.497	0.276	0.219	0.007
06	0.001	0.996	0.001	0.002
07	0.02	0.946	0.031	0.003
08	0.0	0.0	0.0	1.0
09	0.997	0.003	0.0	0.0
10	0.001	0.003	0.0	0.996
11	0.923	0.003	0.074	0.0
12	0.003	0.087	0.714	0.197
13	0.494	0.257	0.209	0.04
14	0.291	0.206	0.22	0.283

PWM

	A	C	G	T
01	-0.181	0.081	-0.005	0.083
02	-0.067	-0.668	0.449	-0.015
03	-0.8	-0.782	0.466	0.405
04	-0.564	1.076	-2.106	-0.979
05	0.688	0.1	-0.131	-3.553
06	-5.232	1.382	-5.395	-4.86
07	-2.536	1.331	-2.096	-4.229
08	-6.987	-6.987	-6.987	1.386
09	1.382	-4.315	-6.361	-6.987
10	-5.59	-4.229	-6.987	1.381
11	1.305	-4.256	-1.219	-6.361
12	-4.345	-1.057	1.048	-0.24
13	0.681	0.029	-0.181	-1.828
14	0.152	-0.194	-0.127	0.123

Standard thresholds

P-value	Threshold
0.001	2.18071
0.0005	3.70146
0.0001	6.89331