| Motif | DUX4.H13INVITRO.0.P.D |
| Gene (human) | DUX4 (GeneCards) |
| Gene synonyms (human) | DUX10 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | DUX4.H13INVITRO.0.P.D |
| Gene (human) | DUX4 (GeneCards) |
| Gene synonyms (human) | DUX10 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | dTGATTARRTTA |
| GC content | 24.79% |
| Information content (bits; total / per base) | 18.406 / 1.534 |
| Data sources | ChIP-Seq |
| Aligned words | 723 |
| Previous names | DUX4.H12INVITRO.0.P.D |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 5 (27) | 0.971 | 0.998 | 0.963 | 0.997 | 0.98 | 0.996 | 6.896 | 8.294 | 691.585 | 1268.678 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 11.32 | 61.339 | 0.6 | 0.45 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | Paired-related HD {3.1.3} (TFClass) |
| TF subfamily | DUX {3.1.3.7} (TFClass) |
| TFClass ID | TFClass: 3.1.3.7.5 |
| HGNC | HGNC:50800 |
| MGI | |
| EntrezGene (human) | GeneID:100288687 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | DUX4_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q9UBX2 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 5 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | DUX4.H13INVITRO.0.P.D.pcm |
| PWM | DUX4.H13INVITRO.0.P.D.pwm |
| PFM | DUX4.H13INVITRO.0.P.D.pfm |
| Threshold to P-value map | DUX4.H13INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | DUX4.H13INVITRO.0.P.D_jaspar_format.txt |
| MEME format | DUX4.H13INVITRO.0.P.D_meme_format.meme |
| Transfac format | DUX4.H13INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 291.0 | 61.0 | 160.0 | 211.0 |
| 02 | 14.0 | 1.0 | 0.0 | 708.0 |
| 03 | 0.0 | 0.0 | 723.0 | 0.0 |
| 04 | 723.0 | 0.0 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 722.0 |
| 06 | 0.0 | 0.0 | 1.0 | 722.0 |
| 07 | 588.0 | 3.0 | 132.0 | 0.0 |
| 08 | 104.0 | 81.0 | 538.0 | 0.0 |
| 09 | 267.0 | 5.0 | 430.0 | 21.0 |
| 10 | 0.0 | 0.0 | 0.0 | 723.0 |
| 11 | 0.0 | 1.0 | 0.0 | 722.0 |
| 12 | 644.0 | 9.0 | 6.0 | 64.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.402 | 0.084 | 0.221 | 0.292 |
| 02 | 0.019 | 0.001 | 0.0 | 0.979 |
| 03 | 0.0 | 0.0 | 1.0 | 0.0 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.001 | 0.0 | 0.0 | 0.999 |
| 06 | 0.0 | 0.0 | 0.001 | 0.999 |
| 07 | 0.813 | 0.004 | 0.183 | 0.0 |
| 08 | 0.144 | 0.112 | 0.744 | 0.0 |
| 09 | 0.369 | 0.007 | 0.595 | 0.029 |
| 10 | 0.0 | 0.0 | 0.0 | 1.0 |
| 11 | 0.0 | 0.001 | 0.0 | 0.999 |
| 12 | 0.891 | 0.012 | 0.008 | 0.089 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.473 | -1.069 | -0.121 | 0.153 |
| 02 | -2.456 | -4.233 | -4.708 | 1.359 |
| 03 | -4.708 | -4.708 | 1.38 | -4.708 |
| 04 | 1.38 | -4.708 | -4.708 | -4.708 |
| 05 | -4.233 | -4.708 | -4.708 | 1.378 |
| 06 | -4.708 | -4.708 | -4.233 | 1.378 |
| 07 | 1.173 | -3.67 | -0.311 | -4.708 |
| 08 | -0.546 | -0.792 | 1.085 | -4.708 |
| 09 | 0.387 | -3.312 | 0.861 | -2.086 |
| 10 | -4.708 | -4.708 | -4.708 | 1.38 |
| 11 | -4.708 | -4.233 | -4.708 | 1.378 |
| 12 | 1.264 | -2.841 | -3.172 | -1.022 |
| P-value | Threshold |
|---|---|
| 0.001 | -0.63577 |
| 0.0005 | 0.920885 |
| 0.0001 | 4.497575 |