FAM200B.H13RSNP.0.PSGIB.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	FAM200B.H13RSNP.0.PSGIB.D
Gene (human)	FAM200B (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	nWGGGTCGYGvMSS
GC content	73.6%
Information content (bits; total / per base)	16.014 / 1.144
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words	5265
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.82	0.829	0.686	0.699	0.696	0.697	43.144	49.367

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
overall, 3 experiments	median	0.86	0.865	0.678	0.702	0.588	0.617
overall, 3 experiments	best	1.0	1.0	1.0	1.0	0.973	0.976
IVT, 1 experiments	median	0.86	0.865	0.678	0.702	0.588	0.617
IVT, 1 experiments	best	0.86	0.865	0.678	0.702	0.588	0.617
GFPIVT, 2 experiments	median	0.813	0.819	0.789	0.789	0.763	0.764
GFPIVT, 2 experiments	best	1.0	1.0	1.0	1.0	0.973	0.976

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	89.377	0.894	0.932	0.871
GFPIVT, 1 experiments	best	364.268	0.902	0.933	0.882

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.992	0.99	0.895	0.899	0.737	0.766
Overall, 2 experiments	best	0.999	0.999	0.968	0.964	0.816	0.833

PBM benchmarking		auROC, QNZS	auPR, QNZS	auROC, SD	auPR, SD
Overall, 4 experiments	median	0.91	0.085	0.907	0.235
Overall, 4 experiments	best	0.929	0.096	0.915	0.284

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	BED zinc finger {2.3.5} (TFClass)
TF subfamily	{2.3.5.0} (TFClass)
TFClass ID	TFClass: 2.3.5.0.255
HGNC
MGI
EntrezGene (human)
EntrezGene (mouse)
UniProt ID (human)	F200B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P0CF97 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	3 overall: 0 Lysate, 1 IVT, 2 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	2
PBM	4

PCM	FAM200B.H13RSNP.0.PSGIB.D.pcm
PWM	FAM200B.H13RSNP.0.PSGIB.D.pwm
PFM	FAM200B.H13RSNP.0.PSGIB.D.pfm
Threshold to P-value map	FAM200B.H13RSNP.0.PSGIB.D.thr
Motif in other formats
JASPAR format	FAM200B.H13RSNP.0.PSGIB.D_jaspar_format.txt
MEME format	FAM200B.H13RSNP.0.PSGIB.D_meme_format.meme
Transfac format	FAM200B.H13RSNP.0.PSGIB.D_transfac_format.txt
Homer format	FAM200B.H13RSNP.0.PSGIB.D_homer_format_0.001.txt FAM200B.H13RSNP.0.PSGIB.D_homer_format_0.0005.txt FAM200B.H13RSNP.0.PSGIB.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1293.25	870.25	2042.25	1059.25
02	934.75	631.75	417.75	3280.75
03	103.0	21.0	5083.0	58.0
04	9.0	9.0	5236.0	11.0
05	2.0	1.0	5259.0	3.0
06	0.0	11.0	0.0	5254.0
07	3.0	5262.0	0.0	0.0
08	91.0	110.0	5051.0	13.0
09	142.0	4116.0	402.0	605.0
10	282.0	213.0	4543.0	227.0
11	2420.0	583.0	1889.0	373.0
12	861.0	3324.0	573.0	507.0
13	449.0	3706.0	679.0	431.0
14	451.0	3355.0	863.0	596.0

PFM

	A	C	G	T
01	0.246	0.165	0.388	0.201
02	0.178	0.12	0.079	0.623
03	0.02	0.004	0.965	0.011
04	0.002	0.002	0.994	0.002
05	0.0	0.0	0.999	0.001
06	0.0	0.002	0.0	0.998
07	0.001	0.999	0.0	0.0
08	0.017	0.021	0.959	0.002
09	0.027	0.782	0.076	0.115
10	0.054	0.04	0.863	0.043
11	0.46	0.111	0.359	0.071
12	0.164	0.631	0.109	0.096
13	0.085	0.704	0.129	0.082
14	0.086	0.637	0.164	0.113

PWM

	A	C	G	T
01	-0.018	-0.413	0.439	-0.217
02	-0.342	-0.732	-1.144	0.912
03	-2.529	-4.043	1.35	-3.087
04	-4.773	-4.773	1.38	-4.608
05	-5.763	-6.039	1.384	-5.547
06	-6.422	-4.608	-6.422	1.383
07	-5.547	1.385	-6.422	-6.422
08	-2.65	-2.464	1.344	-4.467
09	-2.213	1.139	-1.182	-0.775
10	-1.535	-1.813	1.238	-1.75
11	0.608	-0.812	0.361	-1.257
12	-0.424	0.925	-0.83	-0.951
13	-1.072	1.034	-0.66	-1.113
14	-1.068	0.935	-0.421	-0.79

Standard thresholds

P-value	Threshold
0.001	1.48216
0.0005	2.98551
0.0001	6.07762