FIZ1.H13INVITRO.0.PSGI.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	FIZ1.H13INVITRO.0.PSGI.A
Gene (human)	FIZ1 (GeneCards)
Gene synonyms (human)	ZNF798
Gene (mouse)	Fiz1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	17
Consensus	hbvRTKCGAAWYhhRvn
GC content	47.82%
Information content (bits; total / per base)	12.114 / 0.713
Data sources	ChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq
Aligned words	7679
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.941	0.95	0.912	0.925	0.892	0.901	193.618	222.276

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Lysate, 2 experiments	median	0.944	0.949	0.746	0.77	0.634	0.663
Lysate, 2 experiments	best	0.995	0.995	0.796	0.817	0.661	0.693

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
Lysate, 2 experiments	median	687.32	0.98	0.984	0.978
Lysate, 2 experiments	best	1002.432	0.986	0.985	0.978

SMiLE-Seq benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 1 experiments	median	0.999	0.999	0.987	0.984	0.864	0.873
Overall, 1 experiments	best	0.999	0.999	0.987	0.984	0.864	0.873

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.38
HGNC	HGNC:25917
MGI	MGI:1344336
EntrezGene (human)	GeneID:84922 (SSTAR profile)
EntrezGene (mouse)	GeneID:23877 (SSTAR profile)
UniProt ID (human)	FIZ1_HUMAN
UniProt ID (mouse)	FIZ1_MOUSE
UniProt AC (human)	Q96SL8 (TFClass)
UniProt AC (mouse)	Q9WTJ4 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	2 overall: 2 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	2 overall: 2 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	1
PBM	0

PCM	FIZ1.H13INVITRO.0.PSGI.A.pcm
PWM	FIZ1.H13INVITRO.0.PSGI.A.pwm
PFM	FIZ1.H13INVITRO.0.PSGI.A.pfm
Threshold to P-value map	FIZ1.H13INVITRO.0.PSGI.A.thr
Motif in other formats
JASPAR format	FIZ1.H13INVITRO.0.PSGI.A_jaspar_format.txt
MEME format	FIZ1.H13INVITRO.0.PSGI.A_meme_format.meme
Transfac format	FIZ1.H13INVITRO.0.PSGI.A_transfac_format.txt
Homer format	FIZ1.H13INVITRO.0.PSGI.A_homer_format_0.001.txt FIZ1.H13INVITRO.0.PSGI.A_homer_format_0.0005.txt FIZ1.H13INVITRO.0.PSGI.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1279.0	2115.0	1013.0	3272.0
02	1194.0	1666.0	3482.0	1337.0
03	3634.0	888.0	2401.0	756.0
04	2738.0	138.0	4539.0	264.0
05	155.0	153.0	163.0	7208.0
06	323.0	71.0	2624.0	4661.0
07	169.0	7235.0	34.0	241.0
08	1173.0	70.0	6092.0	344.0
09	7214.0	158.0	244.0	63.0
10	6505.0	37.0	1014.0	123.0
11	786.0	430.0	345.0	6118.0
12	317.0	3447.0	627.0	3288.0
13	1507.0	3866.0	1014.0	1292.0
14	1357.0	1073.0	1030.0	4219.0
15	1224.0	768.0	4907.0	780.0
16	1010.25	4551.25	1226.25	891.25
17	1190.75	2295.75	2707.75	1484.75

PFM

	A	C	G	T
01	0.167	0.275	0.132	0.426
02	0.155	0.217	0.453	0.174
03	0.473	0.116	0.313	0.098
04	0.357	0.018	0.591	0.034
05	0.02	0.02	0.021	0.939
06	0.042	0.009	0.342	0.607
07	0.022	0.942	0.004	0.031
08	0.153	0.009	0.793	0.045
09	0.939	0.021	0.032	0.008
10	0.847	0.005	0.132	0.016
11	0.102	0.056	0.045	0.797
12	0.041	0.449	0.082	0.428
13	0.196	0.503	0.132	0.168
14	0.177	0.14	0.134	0.549
15	0.159	0.1	0.639	0.102
16	0.132	0.593	0.16	0.116
17	0.155	0.299	0.353	0.193

PWM

	A	C	G	T
01	-0.406	0.097	-0.638	0.533
02	-0.474	-0.142	0.595	-0.361
03	0.638	-0.77	0.223	-0.93
04	0.355	-2.618	0.86	-1.977
05	-2.503	-2.516	-2.454	1.322
06	-1.777	-3.267	0.312	0.886
07	-2.418	1.326	-3.971	-2.067
08	-0.492	-3.281	1.154	-1.714
09	1.323	-2.484	-2.055	-3.383
10	1.22	-3.892	-0.637	-2.731
11	-0.891	-1.492	-1.711	1.158
12	-1.795	0.585	-1.117	0.538
13	-0.242	0.699	-0.637	-0.395
14	-0.346	-0.581	-0.622	0.787
15	-0.449	-0.914	0.938	-0.899
16	-0.641	0.863	-0.448	-0.766
17	-0.477	0.179	0.344	-0.257

Standard thresholds

P-value	Threshold
0.001	4.13486
0.0005	5.09676
0.0001	7.09251