| Motif | FOXJ2.H13RSNP.2.S.B |
| Gene (human) | FOXJ2 (GeneCards) |
| Gene synonyms (human) | FHX |
| Gene (mouse) | Foxj2 |
| Gene synonyms (mouse) | Fhx |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 2 |
| Quality | B |
| Motif | FOXJ2.H13RSNP.2.S.B |
| Gene (human) | FOXJ2 (GeneCards) |
| Gene synonyms (human) | FHX |
| Gene (mouse) | Foxj2 |
| Gene synonyms (mouse) | Fhx |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 2 |
| Quality | B |
| Motif length | 20 |
| Consensus | nnndKKKTKdWTGTTTAYdb |
| GC content | 29.35% |
| Information content (bits; total / per base) | 15.356 / 0.768 |
| Data sources | HT-SELEX |
| Aligned words | 2297 |
| Previous names | FOXJ2.H12RSNP.2.S.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (6) | 0.555 | 0.586 | 0.362 | 0.386 | 0.735 | 0.783 | 2.324 | 2.622 | 28.313 | 38.056 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.925 | 0.886 | 0.855 | 0.81 | 0.755 | 0.735 |
| best | 0.955 | 0.943 | 0.91 | 0.866 | 0.873 | 0.827 | |
| Methyl HT-SELEX, 2 experiments | median | 0.936 | 0.903 | 0.896 | 0.856 | 0.829 | 0.794 |
| best | 0.937 | 0.907 | 0.91 | 0.866 | 0.873 | 0.827 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.909 | 0.867 | 0.804 | 0.789 | 0.676 | 0.687 |
| best | 0.955 | 0.943 | 0.879 | 0.83 | 0.806 | 0.768 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 2 | 0.629 | 0.363 | 0.507 | 0.361 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Fork head/winged helix factors {3.3} (TFClass) |
| TF family | FOX {3.3.1} (TFClass) |
| TF subfamily | FOXJ {3.3.1.10} (TFClass) |
| TFClass ID | TFClass: 3.3.1.10.2 |
| HGNC | HGNC:24818 |
| MGI | MGI:1926805 |
| EntrezGene (human) | GeneID:55810 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:60611 (SSTAR profile) |
| UniProt ID (human) | FOXJ2_HUMAN |
| UniProt ID (mouse) | FOXJ2_MOUSE |
| UniProt AC (human) | Q9P0K8 (TFClass) |
| UniProt AC (mouse) | Q9ES18 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 2 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | FOXJ2.H13RSNP.2.S.B.pcm |
| PWM | FOXJ2.H13RSNP.2.S.B.pwm |
| PFM | FOXJ2.H13RSNP.2.S.B.pfm |
| Threshold to P-value map | FOXJ2.H13RSNP.2.S.B.thr |
| Motif in other formats | |
| JASPAR format | FOXJ2.H13RSNP.2.S.B_jaspar_format.txt |
| MEME format | FOXJ2.H13RSNP.2.S.B_meme_format.meme |
| Transfac format | FOXJ2.H13RSNP.2.S.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 393.5 | 718.5 | 536.5 | 648.5 |
| 02 | 371.0 | 596.0 | 554.0 | 776.0 |
| 03 | 434.0 | 536.0 | 622.0 | 705.0 |
| 04 | 441.0 | 216.0 | 363.0 | 1277.0 |
| 05 | 278.0 | 142.0 | 443.0 | 1434.0 |
| 06 | 159.0 | 77.0 | 734.0 | 1327.0 |
| 07 | 255.0 | 50.0 | 897.0 | 1095.0 |
| 08 | 63.0 | 105.0 | 59.0 | 2070.0 |
| 09 | 326.0 | 69.0 | 375.0 | 1527.0 |
| 10 | 685.0 | 142.0 | 404.0 | 1066.0 |
| 11 | 735.0 | 205.0 | 107.0 | 1250.0 |
| 12 | 3.0 | 76.0 | 19.0 | 2199.0 |
| 13 | 177.0 | 6.0 | 2110.0 | 4.0 |
| 14 | 9.0 | 8.0 | 8.0 | 2272.0 |
| 15 | 103.0 | 7.0 | 13.0 | 2174.0 |
| 16 | 102.0 | 5.0 | 171.0 | 2019.0 |
| 17 | 2073.0 | 35.0 | 73.0 | 116.0 |
| 18 | 16.0 | 1184.0 | 90.0 | 1007.0 |
| 19 | 535.0 | 295.0 | 581.0 | 886.0 |
| 20 | 369.25 | 374.25 | 477.25 | 1076.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.171 | 0.313 | 0.234 | 0.282 |
| 02 | 0.162 | 0.259 | 0.241 | 0.338 |
| 03 | 0.189 | 0.233 | 0.271 | 0.307 |
| 04 | 0.192 | 0.094 | 0.158 | 0.556 |
| 05 | 0.121 | 0.062 | 0.193 | 0.624 |
| 06 | 0.069 | 0.034 | 0.32 | 0.578 |
| 07 | 0.111 | 0.022 | 0.391 | 0.477 |
| 08 | 0.027 | 0.046 | 0.026 | 0.901 |
| 09 | 0.142 | 0.03 | 0.163 | 0.665 |
| 10 | 0.298 | 0.062 | 0.176 | 0.464 |
| 11 | 0.32 | 0.089 | 0.047 | 0.544 |
| 12 | 0.001 | 0.033 | 0.008 | 0.957 |
| 13 | 0.077 | 0.003 | 0.919 | 0.002 |
| 14 | 0.004 | 0.003 | 0.003 | 0.989 |
| 15 | 0.045 | 0.003 | 0.006 | 0.946 |
| 16 | 0.044 | 0.002 | 0.074 | 0.879 |
| 17 | 0.902 | 0.015 | 0.032 | 0.051 |
| 18 | 0.007 | 0.515 | 0.039 | 0.438 |
| 19 | 0.233 | 0.128 | 0.253 | 0.386 |
| 20 | 0.161 | 0.163 | 0.208 | 0.469 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.376 | 0.223 | -0.068 | 0.121 |
| 02 | -0.435 | 0.037 | -0.036 | 0.3 |
| 03 | -0.279 | -0.069 | 0.08 | 0.205 |
| 04 | -0.263 | -0.972 | -0.457 | 0.797 |
| 05 | -0.722 | -1.387 | -0.259 | 0.913 |
| 06 | -1.275 | -1.988 | 0.245 | 0.836 |
| 07 | -0.808 | -2.406 | 0.445 | 0.644 |
| 08 | -2.183 | -1.684 | -2.247 | 1.28 |
| 09 | -0.564 | -2.095 | -0.424 | 0.976 |
| 10 | 0.176 | -1.387 | -0.35 | 0.617 |
| 11 | 0.246 | -1.024 | -1.666 | 0.776 |
| 12 | -4.76 | -2.001 | -3.315 | 1.34 |
| 13 | -1.169 | -4.285 | 1.299 | -4.576 |
| 14 | -3.964 | -4.06 | -4.06 | 1.373 |
| 15 | -1.703 | -4.166 | -3.653 | 1.329 |
| 16 | -1.713 | -4.42 | -1.204 | 1.255 |
| 17 | 1.281 | -2.747 | -2.04 | -1.586 |
| 18 | -3.47 | 0.722 | -1.835 | 0.56 |
| 19 | -0.071 | -0.663 | 0.012 | 0.432 |
| 20 | -0.44 | -0.426 | -0.184 | 0.627 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.75311 |
| 0.0005 | 3.95471 |
| 0.0001 | 6.45471 |