FOXK1.H13RSNP.0.PS.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	FOXK1.H13RSNP.0.PS.A
Gene (human)	FOXK1 (GeneCards)
Gene synonyms (human)	MNF
Gene (mouse)	Foxk1
Gene synonyms (mouse)	Mnf
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	10
Consensus	TGTTTWChhh
GC content	27.63%
Information content (bits; total / per base)	11.015 / 1.101
Data sources	ChIP-Seq + HT-SELEX
Aligned words	1000
Previous names	FOXK1.H12RSNP.0.PS.A

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.693	0.731	0.559	0.609	0.756	0.816	2.677	2.993	156.319	218.658
Mouse	2 (14)	0.642	0.805	0.491	0.669	0.796	0.916	2.572	3.694	73.828	220.432

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.981	0.968	0.973	0.957	0.941	0.92
Non-Methyl HT-SELEX, 1 experiments	best	0.981	0.968	0.973	0.957	0.941	0.92

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.653	0.309	0.73	0.468

TF superclass	Helix-turn-helix domains {3} (TFClass)
TF class	Fork head/winged helix factors {3.3} (TFClass)
TF family	FOX {3.3.1} (TFClass)
TF subfamily	FOXK {3.3.1.11} (TFClass)
TFClass ID	TFClass: 3.3.1.11.1
HGNC	HGNC:23480
MGI	MGI:1347488
EntrezGene (human)	GeneID:221937 (SSTAR profile)
EntrezGene (mouse)	GeneID:17425 (SSTAR profile)
UniProt ID (human)	FOXK1_HUMAN
UniProt ID (mouse)	FOXK1_MOUSE
UniProt AC (human)	P85037 (TFClass)
UniProt AC (mouse)	P42128 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 2 mouse
HT-SELEX	1
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	FOXK1.H13RSNP.0.PS.A.pcm
PWM	FOXK1.H13RSNP.0.PS.A.pwm
PFM	FOXK1.H13RSNP.0.PS.A.pfm
Threshold to P-value map	FOXK1.H13RSNP.0.PS.A.thr
Motif in other formats
JASPAR format	FOXK1.H13RSNP.0.PS.A_jaspar_format.txt
MEME format	FOXK1.H13RSNP.0.PS.A_meme_format.meme
Transfac format	FOXK1.H13RSNP.0.PS.A_transfac_format.txt
Homer format	FOXK1.H13RSNP.0.PS.A_homer_format_0.001.txt FOXK1.H13RSNP.0.PS.A_homer_format_0.0005.txt FOXK1.H13RSNP.0.PS.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	10.0	3.0	1.0	986.0
02	100.0	4.0	896.0	0.0
03	2.0	3.0	0.0	995.0
04	3.0	1.0	25.0	971.0
05	1.0	3.0	139.0	857.0
06	758.0	62.0	26.0	154.0
07	1.0	692.0	18.0	289.0
08	443.0	195.0	91.0	271.0
09	160.0	198.0	122.0	520.0
10	262.0	157.0	127.0	454.0

PFM

	A	C	G	T
01	0.01	0.003	0.001	0.986
02	0.1	0.004	0.896	0.0
03	0.002	0.003	0.0	0.995
04	0.003	0.001	0.025	0.971
05	0.001	0.003	0.139	0.857
06	0.758	0.062	0.026	0.154
07	0.001	0.692	0.018	0.289
08	0.443	0.195	0.091	0.271
09	0.16	0.198	0.122	0.52
10	0.262	0.157	0.127	0.454

PWM

	A	C	G	T
01	-3.066	-3.975	-4.525	1.367
02	-0.906	-3.783	1.272	-4.982
03	-4.213	-3.975	-4.982	1.376
04	-3.975	-4.525	-2.243	1.352
05	-4.525	-3.975	-0.582	1.227
06	1.105	-1.374	-2.206	-0.48
07	-4.525	1.014	-2.546	0.144
08	0.569	-0.247	-0.999	0.08
09	-0.442	-0.231	-0.71	0.729
10	0.047	-0.461	-0.671	0.594

Standard thresholds

P-value	Threshold
0.001	4.400475
0.0005	5.5363
0.0001	7.58028