GATAD2A.H13INVIVO.0.SG.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	GATAD2A.H13INVIVO.0.SG.D
Gene (human)	GATAD2A (GeneCards)
Gene synonyms (human)
Gene (mouse)	Gatad2a
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	YCTTATCTbdhhhhhnRWYYh
GC content	35.8%
Information content (bits; total / per base)	16.633 / 0.792
Data sources	HT-SELEX + Genomic HT-SELEX
Aligned words	449
Previous names

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
GFPIVT, 1 experiments	median	0.931	0.919	0.733	0.749	0.613	0.646
GFPIVT, 1 experiments	best	0.931	0.919	0.733	0.749	0.613	0.646

Genomic HT-SELEX benchmarking		Centrality	pseudo-auROC	auROC	auPR
GFPIVT, 1 experiments	median	357.886	0.845	0.835	0.837
GFPIVT, 1 experiments	best	405.721	0.924	0.921	0.915

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	Other C4 zinc finger-type factors {2.2} (TFClass)
TF family	C4-GATA-related {2.2.1} (TFClass)
TF subfamily	GATA single {2.2.1.2} (TFClass)
TFClass ID	TFClass: 2.2.1.2.2
HGNC	HGNC:29989
MGI	MGI:2384585
EntrezGene (human)	GeneID:54815 (SSTAR profile)
EntrezGene (mouse)	GeneID:234366 (SSTAR profile)
UniProt ID (human)	P66A_HUMAN
UniProt ID (mouse)	P66A_MOUSE
UniProt AC (human)	Q86YP4 (TFClass)
UniProt AC (mouse)	Q8CHY6 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX	1 overall: 0 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	GATAD2A.H13INVIVO.0.SG.D.pcm
PWM	GATAD2A.H13INVIVO.0.SG.D.pwm
PFM	GATAD2A.H13INVIVO.0.SG.D.pfm
Threshold to P-value map	GATAD2A.H13INVIVO.0.SG.D.thr
Motif in other formats
JASPAR format	GATAD2A.H13INVIVO.0.SG.D_jaspar_format.txt
MEME format	GATAD2A.H13INVIVO.0.SG.D_meme_format.meme
Transfac format	GATAD2A.H13INVIVO.0.SG.D_transfac_format.txt
Homer format	GATAD2A.H13INVIVO.0.SG.D_homer_format_0.001.txt GATAD2A.H13INVIVO.0.SG.D_homer_format_0.0005.txt GATAD2A.H13INVIVO.0.SG.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	7.0	188.0	42.0	212.0
02	4.0	345.0	87.0	13.0
03	0.0	0.0	0.0	449.0
04	0.0	5.0	3.0	441.0
05	446.0	0.0	1.0	2.0
06	0.0	1.0	0.0	448.0
07	0.0	448.0	0.0	1.0
08	79.0	2.0	2.0	366.0
09	35.0	181.0	88.0	145.0
10	83.0	70.0	80.0	216.0
11	79.0	142.0	62.0	166.0
12	75.0	89.0	55.0	230.0
13	96.0	102.0	37.0	214.0
14	116.0	117.0	39.0	177.0
15	126.0	105.0	58.0	160.0
16	83.0	102.0	168.0	96.0
17	262.0	55.0	113.0	19.0
18	187.0	21.0	10.0	231.0
19	14.0	232.0	6.0	197.0
20	35.0	187.0	11.0	216.0
21	67.0	78.0	44.0	260.0

PFM

	A	C	G	T
01	0.016	0.419	0.094	0.472
02	0.009	0.768	0.194	0.029
03	0.0	0.0	0.0	1.0
04	0.0	0.011	0.007	0.982
05	0.993	0.0	0.002	0.004
06	0.0	0.002	0.0	0.998
07	0.0	0.998	0.0	0.002
08	0.176	0.004	0.004	0.815
09	0.078	0.403	0.196	0.323
10	0.185	0.156	0.178	0.481
11	0.176	0.316	0.138	0.37
12	0.167	0.198	0.122	0.512
13	0.214	0.227	0.082	0.477
14	0.258	0.261	0.087	0.394
15	0.281	0.234	0.129	0.356
16	0.185	0.227	0.374	0.214
17	0.584	0.122	0.252	0.042
18	0.416	0.047	0.022	0.514
19	0.031	0.517	0.013	0.439
20	0.078	0.416	0.024	0.481
21	0.149	0.174	0.098	0.579

PWM

	A	C	G	T
01	-2.591	0.51	-0.961	0.63
02	-3.025	1.114	-0.251	-2.058
03	-4.311	-4.311	-4.311	1.376
04	-4.311	-2.858	-3.224	1.358
05	1.369	-4.311	-3.807	-3.474
06	-4.311	-3.807	-4.311	1.374
07	-4.311	1.374	-4.311	-3.807
08	-0.346	-3.474	-3.474	1.173
09	-1.136	0.473	-0.24	0.253
10	-0.297	-0.464	-0.333	0.648
11	-0.346	0.232	-0.583	0.387
12	-0.397	-0.229	-0.7	0.71
13	-0.154	-0.094	-1.083	0.639
14	0.032	0.041	-1.032	0.451
15	0.114	-0.066	-0.648	0.35
16	-0.297	-0.094	0.399	-0.154
17	0.84	-0.7	0.007	-1.713
18	0.505	-1.62	-2.29	0.715
19	-1.992	0.719	-2.716	0.557
20	-1.136	0.505	-2.206	0.648
21	-0.507	-0.358	-0.916	0.832

Standard thresholds

P-value	Threshold
0.001	1.85796
0.0005	3.22526
0.0001	6.06066