| Motif | GLYR1.H13INVIVO.0.B.D |
| Gene (human) | GLYR1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Glyr1 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | GLYR1.H13INVIVO.0.B.D |
| Gene (human) | GLYR1 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Glyr1 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 7 |
| Consensus | nAAAThn |
| GC content | 15.84% |
| Information content (bits; total / per base) | 8.226 / 1.175 |
| Data sources | PBM |
| Aligned words | 562 |
| Previous names |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 11 experiments | median | 0.748 | 0.007 | 0.837 | 0.023 |
| best | 0.875 | 0.038 | 0.9 | 0.039 | |
| TF superclass | beta-Sheet binding to DNA {8} (TFClass) |
| TF class | A.T hook factors {8.2} (TFClass) |
| TF family | Unannotated {8.2.255} (TFClass) |
| TF subfamily | {8.2.255.0} (TFClass) |
| TFClass ID | TFClass: 8.2.255.0.3 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | GLYR1_HUMAN |
| UniProt ID (mouse) | GLYR1_MOUSE |
| UniProt AC (human) | Q49A26 (TFClass) |
| UniProt AC (mouse) | Q922P9 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 11 |
| PCM | GLYR1.H13INVIVO.0.B.D.pcm |
| PWM | GLYR1.H13INVIVO.0.B.D.pwm |
| PFM | GLYR1.H13INVIVO.0.B.D.pfm |
| Threshold to P-value map | GLYR1.H13INVIVO.0.B.D.thr |
| Motif in other formats | |
| JASPAR format | GLYR1.H13INVIVO.0.B.D_jaspar_format.txt |
| MEME format | GLYR1.H13INVIVO.0.B.D_meme_format.meme |
| Transfac format | GLYR1.H13INVIVO.0.B.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 203.0 | 83.0 | 133.0 | 143.0 |
| 02 | 562.0 | 0.0 | 0.0 | 0.0 |
| 03 | 562.0 | 0.0 | 0.0 | 0.0 |
| 04 | 562.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 562.0 |
| 06 | 187.0 | 93.0 | 70.0 | 212.0 |
| 07 | 176.0 | 108.0 | 136.0 | 142.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.361 | 0.148 | 0.237 | 0.254 |
| 02 | 1.0 | 0.0 | 0.0 | 0.0 |
| 03 | 1.0 | 0.0 | 0.0 | 0.0 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.333 | 0.165 | 0.125 | 0.377 |
| 07 | 0.313 | 0.192 | 0.242 | 0.253 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.365 | -0.519 | -0.054 | 0.017 |
| 02 | 1.378 | -4.497 | -4.497 | -4.497 |
| 03 | 1.378 | -4.497 | -4.497 | -4.497 |
| 04 | 1.378 | -4.497 | -4.497 | -4.497 |
| 05 | -4.497 | -4.497 | -4.497 | 1.378 |
| 06 | 0.283 | -0.407 | -0.686 | 0.408 |
| 07 | 0.223 | -0.26 | -0.032 | 0.011 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.80459 |
| 0.0005 | 6.0334 |
| 0.0001 | 6.349525 |