| Motif | GTF2IRD2.H13INVIVO.0.PS.A |
| Gene (human) | GTF2IRD2 (GeneCards) |
| Gene synonyms (human) | GTF2IRD2A |
| Gene (mouse) | Gtf2ird2 |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | GTF2IRD2.H13INVIVO.0.PS.A |
| Gene (human) | GTF2IRD2 (GeneCards) |
| Gene synonyms (human) | GTF2IRD2A |
| Gene (mouse) | Gtf2ird2 |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 10 |
| Consensus | GMGGGCCRnd |
| GC content | 81.22% |
| Information content (bits; total / per base) | 12.109 / 1.211 |
| Data sources | ChIP-Seq + HT-SELEX |
| Aligned words | 6490 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (1) | 0.785 | 0.785 | 0.681 | 0.681 | 0.707 | 0.707 | 8.678 | 8.678 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Lysate, 2 experiments | median | 0.659 | 0.67 | 0.581 | 0.591 | 0.544 | 0.554 |
| best | 0.69 | 0.71 | 0.589 | 0.609 | 0.544 | 0.562 | |
| TF superclass | Yet undefined DNA-binding domains {0} (TFClass) |
| TF class | GTF2I domain factors {0.5} (TFClass) |
| TF family | TFII-I-related {0.5.1} (TFClass) |
| TF subfamily | {0.5.1.0} (TFClass) |
| TFClass ID | TFClass: 0.5.1.0.3 |
| HGNC | HGNC:30775 |
| MGI | MGI:2149780 |
| EntrezGene (human) | GeneID:84163 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:114674 (SSTAR profile) |
| UniProt ID (human) | GTD2A_HUMAN |
| UniProt ID (mouse) | GT2D2_MOUSE |
| UniProt AC (human) | Q86UP8 (TFClass) |
| UniProt AC (mouse) | Q99NI3 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 2 overall: 2 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | GTF2IRD2.H13INVIVO.0.PS.A.pcm |
| PWM | GTF2IRD2.H13INVIVO.0.PS.A.pwm |
| PFM | GTF2IRD2.H13INVIVO.0.PS.A.pfm |
| Threshold to P-value map | GTF2IRD2.H13INVIVO.0.PS.A.thr |
| Motif in other formats | |
| JASPAR format | GTF2IRD2.H13INVIVO.0.PS.A_jaspar_format.txt |
| MEME format | GTF2IRD2.H13INVIVO.0.PS.A_meme_format.meme |
| Transfac format | GTF2IRD2.H13INVIVO.0.PS.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 359.75 | 58.75 | 5797.75 | 273.75 |
| 02 | 648.0 | 5112.0 | 475.0 | 255.0 |
| 03 | 9.0 | 0.0 | 6453.0 | 28.0 |
| 04 | 0.0 | 0.0 | 6469.0 | 21.0 |
| 05 | 7.0 | 0.0 | 6483.0 | 0.0 |
| 06 | 377.0 | 5946.0 | 0.0 | 167.0 |
| 07 | 239.0 | 5544.0 | 642.0 | 65.0 |
| 08 | 3510.0 | 149.0 | 2674.0 | 157.0 |
| 09 | 1040.0 | 2009.0 | 1621.0 | 1820.0 |
| 10 | 2702.25 | 492.25 | 2788.25 | 507.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.055 | 0.009 | 0.893 | 0.042 |
| 02 | 0.1 | 0.788 | 0.073 | 0.039 |
| 03 | 0.001 | 0.0 | 0.994 | 0.004 |
| 04 | 0.0 | 0.0 | 0.997 | 0.003 |
| 05 | 0.001 | 0.0 | 0.999 | 0.0 |
| 06 | 0.058 | 0.916 | 0.0 | 0.026 |
| 07 | 0.037 | 0.854 | 0.099 | 0.01 |
| 08 | 0.541 | 0.023 | 0.412 | 0.024 |
| 09 | 0.16 | 0.31 | 0.25 | 0.28 |
| 10 | 0.416 | 0.076 | 0.43 | 0.078 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.502 | -3.283 | 1.273 | -1.773 |
| 02 | -0.916 | 1.147 | -1.225 | -1.843 |
| 03 | -4.978 | -6.607 | 1.38 | -3.985 |
| 04 | -6.607 | -6.607 | 1.382 | -4.249 |
| 05 | -5.174 | -6.607 | 1.384 | -6.607 |
| 06 | -1.455 | 1.298 | -6.607 | -2.262 |
| 07 | -1.907 | 1.228 | -0.925 | -3.185 |
| 08 | 0.771 | -2.375 | 0.499 | -2.323 |
| 09 | -0.444 | 0.213 | -0.001 | 0.115 |
| 10 | 0.51 | -1.19 | 0.541 | -1.16 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.870665 |
| 0.0005 | 5.112665 |
| 0.0001 | 7.472475 |