HIF3A.H13CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	HIF3A.H13CORE.0.P.C
Gene (human)	HIF3A (GeneCards)
Gene synonyms (human)	BHLHE17, MOP7, PASD7
Gene (mouse)	Hif3a
Gene synonyms (mouse)	Mop7, Nepas
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	18
Consensus	dRCGTGhbnvnnnbSRbv
GC content	61.2%
Information content (bits; total / per base)	10.983 / 0.61
Data sources	ChIP-Seq
Aligned words	1000
Previous names	HIF3A.H12CORE.0.P.C

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.93	0.934	0.863	0.871	0.883	0.901	3.625	3.815	460.0	488.0

TF superclass	Basic domains {1} (TFClass)
TF class	Basic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF family	PAS {1.2.5} (TFClass)
TF subfamily	PAS-AHR {1.2.5.1} (TFClass)
TFClass ID	TFClass: 1.2.5.1.6
HGNC	HGNC:15825
MGI	MGI:1859778
EntrezGene (human)	GeneID:64344 (SSTAR profile)
EntrezGene (mouse)	GeneID:53417 (SSTAR profile)
UniProt ID (human)	HIF3A_HUMAN
UniProt ID (mouse)	HIF3A_MOUSE
UniProt AC (human)	Q9Y2N7 (TFClass)
UniProt AC (mouse)	Q0VBL6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	HIF3A.H13CORE.0.P.C.pcm
PWM	HIF3A.H13CORE.0.P.C.pwm
PFM	HIF3A.H13CORE.0.P.C.pfm
Threshold to P-value map	HIF3A.H13CORE.0.P.C.thr
Motif in other formats
JASPAR format	HIF3A.H13CORE.0.P.C_jaspar_format.txt
MEME format	HIF3A.H13CORE.0.P.C_meme_format.meme
Transfac format	HIF3A.H13CORE.0.P.C_transfac_format.txt
Homer format	HIF3A.H13CORE.0.P.C_homer_format_0.001.txt HIF3A.H13CORE.0.P.C_homer_format_0.0005.txt HIF3A.H13CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	154.0	123.0	296.0	427.0
02	729.0	39.0	217.0	15.0
03	1.0	949.0	1.0	49.0
04	22.0	13.0	961.0	4.0
05	7.0	2.0	3.0	988.0
06	1.0	2.0	996.0	1.0
07	245.0	545.0	74.0	136.0
08	166.0	383.0	272.0	179.0
09	153.0	244.0	265.0	338.0
10	212.0	188.0	431.0	169.0
11	189.0	264.0	286.0	261.0
12	162.0	299.0	339.0	200.0
13	200.0	264.0	301.0	235.0
14	157.0	166.0	468.0	209.0
15	82.0	717.0	154.0	47.0
16	595.0	133.0	209.0	63.0
17	90.0	465.0	242.0	203.0
18	205.0	125.0	580.0	90.0

PFM

	A	C	G	T
01	0.154	0.123	0.296	0.427
02	0.729	0.039	0.217	0.015
03	0.001	0.949	0.001	0.049
04	0.022	0.013	0.961	0.004
05	0.007	0.002	0.003	0.988
06	0.001	0.002	0.996	0.001
07	0.245	0.545	0.074	0.136
08	0.166	0.383	0.272	0.179
09	0.153	0.244	0.265	0.338
10	0.212	0.188	0.431	0.169
11	0.189	0.264	0.286	0.261
12	0.162	0.299	0.339	0.2
13	0.2	0.264	0.301	0.235
14	0.157	0.166	0.468	0.209
15	0.082	0.717	0.154	0.047
16	0.595	0.133	0.209	0.063
17	0.09	0.465	0.242	0.203
18	0.205	0.125	0.58	0.09

PWM

	A	C	G	T
01	-0.48	-0.702	0.168	0.532
02	1.066	-1.821	-0.141	-2.711
03	-4.525	1.329	-4.525	-1.602
04	-2.362	-2.839	1.341	-3.783
05	-3.362	-4.213	-3.975	1.369
06	-4.525	-4.213	1.377	-4.525
07	-0.02	0.776	-1.201	-0.603
08	-0.406	0.424	0.084	-0.331
09	-0.487	-0.024	0.058	0.3
10	-0.164	-0.283	0.542	-0.388
11	-0.278	0.054	0.134	0.043
12	-0.43	0.178	0.303	-0.221
13	-0.221	0.054	0.184	-0.061
14	-0.461	-0.406	0.624	-0.178
15	-1.101	1.049	-0.48	-1.642
16	0.863	-0.625	-0.178	-1.358
17	-1.01	0.617	-0.032	-0.207
18	-0.197	-0.686	0.838	-1.01

Standard thresholds

P-value	Threshold
0.001	4.54511
0.0005	5.52756
0.0001	7.38591