| Motif | JRK.H13INVITRO.0.PSGB.A |
| Gene (human) | JRK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Jrk |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | JRK.H13INVITRO.0.PSGB.A |
| Gene (human) | JRK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Jrk |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 17 |
| Consensus | vCCTCRvTTAACCGGAA |
| GC content | 51.06% |
| Information content (bits; total / per base) | 24.855 / 1.462 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + PBM |
| Aligned words | 9974 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 3 (4) | 0.792 | 0.822 | 0.755 | 0.776 | 0.692 | 0.729 | 65.149 | 72.569 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.869 | 0.891 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.997 | 0.997 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.981 | 0.983 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.997 | 0.997 | |
| IVT, 1 experiments | median | 0.932 | 0.935 | 0.707 | 0.742 | 0.589 | 0.635 |
| best | 0.932 | 0.935 | 0.707 | 0.742 | 0.589 | 0.635 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 0.948 | 0.954 | 0.788 | 0.82 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.869 | 0.891 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 4 experiments | median | 189.916 | 0.79 | 0.807 | 0.821 |
| best | 703.699 | 0.968 | 0.963 | 0.962 | |
| Lysate, 2 experiments | median | 620.235 | 0.93 | 0.949 | 0.947 |
| best | 703.699 | 0.968 | 0.963 | 0.962 | |
| GFPIVT, 2 experiments | median | 140.061 | 0.732 | 0.749 | 0.774 |
| best | 210.456 | 0.825 | 0.843 | 0.852 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.816 | 0.036 | 0.684 | 0.024 |
| best | 0.828 | 0.12 | 0.764 | 0.053 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.1 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | JERKY_HUMAN |
| UniProt ID (mouse) | JERKY_MOUSE |
| UniProt AC (human) | O75564 (TFClass) |
| UniProt AC (mouse) | Q60976 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 4 overall: 2 Lysate, 0 IVT, 2 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 6 |
| PCM | JRK.H13INVITRO.0.PSGB.A.pcm |
| PWM | JRK.H13INVITRO.0.PSGB.A.pwm |
| PFM | JRK.H13INVITRO.0.PSGB.A.pfm |
| Threshold to P-value map | JRK.H13INVITRO.0.PSGB.A.thr |
| Motif in other formats | |
| JASPAR format | JRK.H13INVITRO.0.PSGB.A_jaspar_format.txt |
| MEME format | JRK.H13INVITRO.0.PSGB.A_meme_format.meme |
| Transfac format | JRK.H13INVITRO.0.PSGB.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4510.75 | 2440.75 | 2638.75 | 383.75 |
| 02 | 371.25 | 9281.25 | 135.25 | 186.25 |
| 03 | 40.0 | 9140.0 | 11.0 | 783.0 |
| 04 | 12.0 | 1853.0 | 10.0 | 8099.0 |
| 05 | 14.0 | 9946.0 | 5.0 | 9.0 |
| 06 | 4620.0 | 113.0 | 5171.0 | 70.0 |
| 07 | 3533.0 | 1743.0 | 3608.0 | 1090.0 |
| 08 | 517.0 | 63.0 | 34.0 | 9360.0 |
| 09 | 22.0 | 45.0 | 0.0 | 9907.0 |
| 10 | 9964.0 | 0.0 | 1.0 | 9.0 |
| 11 | 6084.0 | 0.0 | 2.0 | 3888.0 |
| 12 | 9.0 | 9956.0 | 1.0 | 8.0 |
| 13 | 0.0 | 9965.0 | 0.0 | 9.0 |
| 14 | 61.0 | 3.0 | 9903.0 | 7.0 |
| 15 | 112.0 | 20.0 | 9565.0 | 277.0 |
| 16 | 9466.5 | 246.5 | 74.5 | 186.5 |
| 17 | 8977.25 | 352.25 | 257.25 | 387.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.452 | 0.245 | 0.265 | 0.038 |
| 02 | 0.037 | 0.931 | 0.014 | 0.019 |
| 03 | 0.004 | 0.916 | 0.001 | 0.079 |
| 04 | 0.001 | 0.186 | 0.001 | 0.812 |
| 05 | 0.001 | 0.997 | 0.001 | 0.001 |
| 06 | 0.463 | 0.011 | 0.518 | 0.007 |
| 07 | 0.354 | 0.175 | 0.362 | 0.109 |
| 08 | 0.052 | 0.006 | 0.003 | 0.938 |
| 09 | 0.002 | 0.005 | 0.0 | 0.993 |
| 10 | 0.999 | 0.0 | 0.0 | 0.001 |
| 11 | 0.61 | 0.0 | 0.0 | 0.39 |
| 12 | 0.001 | 0.998 | 0.0 | 0.001 |
| 13 | 0.0 | 0.999 | 0.0 | 0.001 |
| 14 | 0.006 | 0.0 | 0.993 | 0.001 |
| 15 | 0.011 | 0.002 | 0.959 | 0.028 |
| 16 | 0.949 | 0.025 | 0.007 | 0.019 |
| 17 | 0.9 | 0.035 | 0.026 | 0.039 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.592 | -0.021 | 0.057 | -1.866 |
| 02 | -1.899 | 1.314 | -2.898 | -2.583 |
| 03 | -4.078 | 1.298 | -5.234 | -1.156 |
| 04 | -5.162 | -0.297 | -5.313 | 1.177 |
| 05 | -5.031 | 1.383 | -5.834 | -5.397 |
| 06 | 0.616 | -3.075 | 0.729 | -3.542 |
| 07 | 0.348 | -0.358 | 0.369 | -0.826 |
| 08 | -1.57 | -3.643 | -4.23 | 1.322 |
| 09 | -4.632 | -3.966 | -6.989 | 1.379 |
| 10 | 1.385 | -6.989 | -6.628 | -5.397 |
| 11 | 0.891 | -6.989 | -6.363 | 0.444 |
| 12 | -5.397 | 1.384 | -6.628 | -5.49 |
| 13 | -6.989 | 1.385 | -6.989 | -5.397 |
| 14 | -3.674 | -6.154 | 1.378 | -5.592 |
| 15 | -3.084 | -4.718 | 1.344 | -2.19 |
| 16 | 1.333 | -2.306 | -3.481 | -2.582 |
| 17 | 1.28 | -1.952 | -2.263 | -1.857 |
| P-value | Threshold |
|---|---|
| 0.001 | -7.54129 |
| 0.0005 | -5.36929 |
| 0.0001 | -0.77194 |