| Motif | JRK.H13INVIVO.0.PSGB.A |
| Gene (human) | JRK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Jrk |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | JRK.H13INVIVO.0.PSGB.A |
| Gene (human) | JRK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Jrk |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 16 |
| Consensus | hYYCvvbYWhCCGGMv |
| GC content | 55.15% |
| Information content (bits; total / per base) | 11.6 / 0.725 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + PBM |
| Aligned words | 500 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 3 (4) | 0.845 | 0.862 | 0.793 | 0.813 | 0.746 | 0.764 | 126.447 | 157.959 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.875 | 0.894 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.995 | 0.995 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.979 | 0.98 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.995 | 0.995 | |
| IVT, 1 experiments | median | 0.92 | 0.922 | 0.692 | 0.73 | 0.574 | 0.625 |
| best | 0.92 | 0.922 | 0.692 | 0.73 | 0.574 | 0.625 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 0.947 | 0.953 | 0.794 | 0.823 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.875 | 0.894 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 4 experiments | median | 146.183 | 0.811 | 0.811 | 0.821 |
| best | 763.041 | 0.965 | 0.96 | 0.954 | |
| Lysate, 2 experiments | median | 664.906 | 0.919 | 0.94 | 0.938 |
| best | 763.041 | 0.965 | 0.96 | 0.954 | |
| GFPIVT, 2 experiments | median | 105.227 | 0.765 | 0.777 | 0.786 |
| best | 163.796 | 0.835 | 0.828 | 0.842 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.743 | 0.034 | 0.675 | 0.02 |
| best | 0.804 | 0.078 | 0.712 | 0.03 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.1 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | JERKY_HUMAN |
| UniProt ID (mouse) | JERKY_MOUSE |
| UniProt AC (human) | O75564 (TFClass) |
| UniProt AC (mouse) | Q60976 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 4 overall: 2 Lysate, 0 IVT, 2 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 6 |
| PCM | JRK.H13INVIVO.0.PSGB.A.pcm |
| PWM | JRK.H13INVIVO.0.PSGB.A.pwm |
| PFM | JRK.H13INVIVO.0.PSGB.A.pfm |
| Threshold to P-value map | JRK.H13INVIVO.0.PSGB.A.thr |
| Motif in other formats | |
| JASPAR format | JRK.H13INVIVO.0.PSGB.A_jaspar_format.txt |
| MEME format | JRK.H13INVIVO.0.PSGB.A_meme_format.meme |
| Transfac format | JRK.H13INVIVO.0.PSGB.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 69.0 | 270.0 | 64.0 | 97.0 |
| 02 | 11.0 | 347.0 | 4.0 | 138.0 |
| 03 | 0.0 | 228.0 | 13.0 | 259.0 |
| 04 | 6.0 | 477.0 | 2.0 | 15.0 |
| 05 | 221.0 | 63.0 | 160.0 | 56.0 |
| 06 | 92.0 | 129.0 | 203.0 | 76.0 |
| 07 | 78.0 | 115.0 | 88.0 | 219.0 |
| 08 | 83.0 | 117.0 | 5.0 | 295.0 |
| 09 | 384.0 | 21.0 | 12.0 | 83.0 |
| 10 | 184.0 | 56.0 | 24.0 | 236.0 |
| 11 | 38.0 | 428.0 | 19.0 | 15.0 |
| 12 | 15.0 | 440.0 | 6.0 | 39.0 |
| 13 | 128.0 | 3.0 | 369.0 | 0.0 |
| 14 | 31.0 | 32.0 | 409.0 | 28.0 |
| 15 | 319.0 | 77.0 | 65.0 | 39.0 |
| 16 | 272.0 | 77.0 | 89.0 | 62.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.138 | 0.54 | 0.128 | 0.194 |
| 02 | 0.022 | 0.694 | 0.008 | 0.276 |
| 03 | 0.0 | 0.456 | 0.026 | 0.518 |
| 04 | 0.012 | 0.954 | 0.004 | 0.03 |
| 05 | 0.442 | 0.126 | 0.32 | 0.112 |
| 06 | 0.184 | 0.258 | 0.406 | 0.152 |
| 07 | 0.156 | 0.23 | 0.176 | 0.438 |
| 08 | 0.166 | 0.234 | 0.01 | 0.59 |
| 09 | 0.768 | 0.042 | 0.024 | 0.166 |
| 10 | 0.368 | 0.112 | 0.048 | 0.472 |
| 11 | 0.076 | 0.856 | 0.038 | 0.03 |
| 12 | 0.03 | 0.88 | 0.012 | 0.078 |
| 13 | 0.256 | 0.006 | 0.738 | 0.0 |
| 14 | 0.062 | 0.064 | 0.818 | 0.056 |
| 15 | 0.638 | 0.154 | 0.13 | 0.078 |
| 16 | 0.544 | 0.154 | 0.178 | 0.124 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.584 | 0.763 | -0.658 | -0.25 |
| 02 | -2.311 | 1.013 | -3.126 | 0.098 |
| 03 | -4.4 | 0.595 | -2.163 | 0.722 |
| 04 | -2.819 | 1.33 | -3.573 | -2.034 |
| 05 | 0.565 | -0.673 | 0.244 | -0.788 |
| 06 | -0.302 | 0.031 | 0.48 | -0.49 |
| 07 | -0.464 | -0.082 | -0.346 | 0.555 |
| 08 | -0.403 | -0.065 | -2.961 | 0.852 |
| 09 | 1.114 | -1.725 | -2.234 | -0.403 |
| 10 | 0.383 | -0.788 | -1.6 | 0.63 |
| 11 | -1.163 | 1.222 | -1.818 | -2.034 |
| 12 | -2.034 | 1.25 | -2.819 | -1.138 |
| 13 | 0.023 | -3.325 | 1.074 | -4.4 |
| 14 | -1.358 | -1.328 | 1.177 | -1.454 |
| 15 | 0.929 | -0.477 | -0.643 | -1.138 |
| 16 | 0.771 | -0.477 | -0.335 | -0.689 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.39746 |
| 0.0005 | 5.30171 |
| 0.0001 | 7.16821 |