| Motif | JRK.H13RSNP.0.PSGB.D |
| Gene (human) | JRK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Jrk |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | JRK.H13RSNP.0.PSGB.D |
| Gene (human) | JRK (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Jrk |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 19 |
| Consensus | nvCCTCRvTTAACCGGAAh |
| GC content | 49.55% |
| Information content (bits; total / per base) | 25.894 / 1.363 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX + PBM |
| Aligned words | 9931 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 3 (4) | 0.816 | 0.848 | 0.773 | 0.796 | 0.693 | 0.725 | 63.26 | 74.553 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| overall, 5 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.868 | 0.89 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.997 | 0.997 | |
| Lysate, 2 experiments | median | 1.0 | 1.0 | 1.0 | 1.0 | 0.981 | 0.982 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.997 | 0.997 | |
| IVT, 1 experiments | median | 0.931 | 0.934 | 0.708 | 0.741 | 0.589 | 0.635 |
| best | 0.931 | 0.934 | 0.708 | 0.741 | 0.589 | 0.635 | |
| GFPIVT, 2 experiments | median | 1.0 | 1.0 | 0.948 | 0.954 | 0.789 | 0.82 |
| best | 1.0 | 1.0 | 1.0 | 1.0 | 0.868 | 0.89 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| overall, 4 experiments | median | 191.044 | 0.797 | 0.808 | 0.828 |
| best | 679.854 | 0.97 | 0.972 | 0.967 | |
| Lysate, 2 experiments | median | 609.72 | 0.937 | 0.958 | 0.954 |
| best | 679.854 | 0.97 | 0.972 | 0.967 | |
| GFPIVT, 2 experiments | median | 139.159 | 0.737 | 0.753 | 0.778 |
| best | 213.022 | 0.831 | 0.842 | 0.86 | |
| PBM benchmarking | auROC, QNZS | auPR, QNZS | auROC, SD | auPR, SD | |
|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.792 | 0.026 | 0.679 | 0.016 |
| best | 0.797 | 0.088 | 0.751 | 0.047 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Other {3.0} (TFClass) |
| TF family | CENPB {3.0.256} (TFClass) |
| TF subfamily | {3.0.256.0} (TFClass) |
| TFClass ID | TFClass: 3.0.256.0.1 |
| HGNC | |
| MGI | |
| EntrezGene (human) | |
| EntrezGene (mouse) | |
| UniProt ID (human) | JERKY_HUMAN |
| UniProt ID (mouse) | JERKY_MOUSE |
| UniProt AC (human) | O75564 (TFClass) |
| UniProt AC (mouse) | Q60976 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 5 overall: 2 Lysate, 1 IVT, 2 GFPIVT |
| Genomic HT-SELEX | 4 overall: 2 Lysate, 0 IVT, 2 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 6 |
| PCM | JRK.H13RSNP.0.PSGB.D.pcm |
| PWM | JRK.H13RSNP.0.PSGB.D.pwm |
| PFM | JRK.H13RSNP.0.PSGB.D.pfm |
| Threshold to P-value map | JRK.H13RSNP.0.PSGB.D.thr |
| Motif in other formats | |
| JASPAR format | JRK.H13RSNP.0.PSGB.D_jaspar_format.txt |
| MEME format | JRK.H13RSNP.0.PSGB.D_meme_format.meme |
| Transfac format | JRK.H13RSNP.0.PSGB.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3771.75 | 2690.75 | 1775.75 | 1692.75 |
| 02 | 4582.25 | 2315.25 | 2728.25 | 305.25 |
| 03 | 287.0 | 9411.0 | 85.0 | 148.0 |
| 04 | 31.0 | 9174.0 | 9.0 | 717.0 |
| 05 | 11.0 | 1383.0 | 9.0 | 8528.0 |
| 06 | 13.0 | 9895.0 | 7.0 | 16.0 |
| 07 | 4761.0 | 70.0 | 5052.0 | 48.0 |
| 08 | 3460.0 | 1743.0 | 3636.0 | 1092.0 |
| 09 | 497.0 | 38.0 | 25.0 | 9371.0 |
| 10 | 20.0 | 51.0 | 2.0 | 9858.0 |
| 11 | 9920.0 | 2.0 | 2.0 | 7.0 |
| 12 | 6054.0 | 3.0 | 6.0 | 3868.0 |
| 13 | 10.0 | 9909.0 | 3.0 | 9.0 |
| 14 | 2.0 | 9912.0 | 2.0 | 15.0 |
| 15 | 99.0 | 10.0 | 9811.0 | 11.0 |
| 16 | 75.0 | 22.0 | 9723.0 | 111.0 |
| 17 | 9630.0 | 173.0 | 29.0 | 99.0 |
| 18 | 9333.25 | 198.25 | 158.25 | 241.25 |
| 19 | 1928.75 | 2777.75 | 661.75 | 4562.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.38 | 0.271 | 0.179 | 0.17 |
| 02 | 0.461 | 0.233 | 0.275 | 0.031 |
| 03 | 0.029 | 0.948 | 0.009 | 0.015 |
| 04 | 0.003 | 0.924 | 0.001 | 0.072 |
| 05 | 0.001 | 0.139 | 0.001 | 0.859 |
| 06 | 0.001 | 0.996 | 0.001 | 0.002 |
| 07 | 0.479 | 0.007 | 0.509 | 0.005 |
| 08 | 0.348 | 0.176 | 0.366 | 0.11 |
| 09 | 0.05 | 0.004 | 0.003 | 0.944 |
| 10 | 0.002 | 0.005 | 0.0 | 0.993 |
| 11 | 0.999 | 0.0 | 0.0 | 0.001 |
| 12 | 0.61 | 0.0 | 0.001 | 0.389 |
| 13 | 0.001 | 0.998 | 0.0 | 0.001 |
| 14 | 0.0 | 0.998 | 0.0 | 0.002 |
| 15 | 0.01 | 0.001 | 0.988 | 0.001 |
| 16 | 0.008 | 0.002 | 0.979 | 0.011 |
| 17 | 0.97 | 0.017 | 0.003 | 0.01 |
| 18 | 0.94 | 0.02 | 0.016 | 0.024 |
| 19 | 0.194 | 0.28 | 0.067 | 0.459 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.418 | 0.08 | -0.335 | -0.383 |
| 02 | 0.612 | -0.07 | 0.094 | -2.089 |
| 03 | -2.151 | 1.332 | -3.349 | -2.805 |
| 04 | -4.312 | 1.306 | -5.393 | -1.24 |
| 05 | -5.23 | -0.584 | -5.393 | 1.233 |
| 06 | -5.09 | 1.382 | -5.588 | -4.911 |
| 07 | 0.651 | -3.537 | 0.71 | -3.9 |
| 08 | 0.332 | -0.353 | 0.381 | -0.82 |
| 09 | -1.605 | -4.122 | -4.511 | 1.328 |
| 10 | -4.713 | -3.842 | -6.359 | 1.378 |
| 11 | 1.384 | -6.359 | -6.359 | -5.588 |
| 12 | 0.891 | -6.15 | -5.702 | 0.443 |
| 13 | -5.308 | 1.383 | -6.15 | -5.393 |
| 14 | -6.359 | 1.384 | -6.359 | -4.967 |
| 15 | -3.2 | -5.308 | 1.373 | -5.23 |
| 16 | -3.47 | -4.628 | 1.364 | -3.088 |
| 17 | 1.355 | -2.652 | -4.374 | -3.2 |
| 18 | 1.324 | -2.517 | -2.739 | -2.323 |
| 19 | -0.252 | 0.112 | -1.32 | 0.608 |
| P-value | Threshold |
|---|---|
| 0.001 | -8.32839 |
| 0.0005 | -6.15599 |
| 0.0001 | -1.54884 |