JUNB.H13CORE.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUNB.H13CORE.0.PM.A
Gene (human)	JUNB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Junb
Gene synonyms (mouse)	Jun-b
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	10
Consensus	vTGAGTCAbn
GC content	42.88%
Information content (bits; total / per base)	12.221 / 1.222
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	1000
Previous names	JUNB.H12CORE.0.PM.A

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	22 (137)	0.921	0.986	0.868	0.974	0.919	0.979	3.659	4.686	177.699	545.26
Mouse	25 (148)	0.898	0.969	0.842	0.939	0.878	0.961	3.285	4.119	186.855	390.268

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.743	0.725	0.641	0.636	0.586	0.587
Overall, 2 experiments	best	0.85	0.838	0.707	0.706	0.622	0.63
Methyl HT-SELEX, 1 experiments	median	0.85	0.838	0.707	0.706	0.622	0.63
Methyl HT-SELEX, 1 experiments	best	0.85	0.838	0.707	0.706	0.622	0.63
Non-Methyl HT-SELEX, 1 experiments	median	0.635	0.613	0.576	0.567	0.551	0.545
Non-Methyl HT-SELEX, 1 experiments	best	0.635	0.613	0.576	0.567	0.551	0.545

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.545	0.088	0.029	0.071

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.2
HGNC	HGNC:6205
MGI	MGI:96647
EntrezGene (human)	GeneID:3726 (SSTAR profile)
EntrezGene (mouse)	GeneID:16477 (SSTAR profile)
UniProt ID (human)	JUNB_HUMAN
UniProt ID (mouse)	JUNB_MOUSE
UniProt AC (human)	P17275 (TFClass)
UniProt AC (mouse)	P09450 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	22 human, 25 mouse
HT-SELEX	1
Methyl-HT-SELEX	1
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	JUNB.H13CORE.0.PM.A.pcm
PWM	JUNB.H13CORE.0.PM.A.pwm
PFM	JUNB.H13CORE.0.PM.A.pfm
Threshold to P-value map	JUNB.H13CORE.0.PM.A.thr
Motif in other formats
JASPAR format	JUNB.H13CORE.0.PM.A_jaspar_format.txt
MEME format	JUNB.H13CORE.0.PM.A_meme_format.meme
Transfac format	JUNB.H13CORE.0.PM.A_transfac_format.txt
Homer format	JUNB.H13CORE.0.PM.A_homer_format_0.001.txt JUNB.H13CORE.0.PM.A_homer_format_0.0005.txt JUNB.H13CORE.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	438.0	246.0	269.0	47.0
02	5.0	4.0	9.0	982.0
03	5.0	12.0	895.0	88.0
04	949.0	23.0	7.0	21.0
05	158.0	0.0	842.0	0.0
06	18.0	10.0	9.0	963.0
07	39.0	947.0	7.0	7.0
08	994.0	1.0	3.0	2.0
09	34.0	368.0	175.0	423.0
10	262.0	304.0	157.0	277.0

PFM

	A	C	G	T
01	0.438	0.246	0.269	0.047
02	0.005	0.004	0.009	0.982
03	0.005	0.012	0.895	0.088
04	0.949	0.023	0.007	0.021
05	0.158	0.0	0.842	0.0
06	0.018	0.01	0.009	0.963
07	0.039	0.947	0.007	0.007
08	0.994	0.001	0.003	0.002
09	0.034	0.368	0.175	0.423
10	0.262	0.304	0.157	0.277

PWM

	A	C	G	T
01	0.558	-0.016	0.073	-1.642
02	-3.622	-3.783	-3.156	1.363
03	-3.622	-2.909	1.27	-1.032
04	1.329	-2.32	-3.362	-2.405
05	-0.455	-4.982	1.209	-4.982
06	-2.546	-3.066	-3.156	1.344
07	-1.821	1.327	-3.362	-3.362
08	1.375	-4.525	-3.975	-4.213
09	-1.952	0.384	-0.354	0.523
10	0.047	0.194	-0.461	0.102

Standard thresholds

P-value	Threshold
0.001	3.9012
0.0005	5.0291
0.0001	7.32826