| Motif | KAISO.H13RSNP.0.P.B |
| Gene (human) | ZBTB33 (GeneCards) |
| Gene synonyms (human) | KAISO, ZNF348 |
| Gene (mouse) | Zbtb33 |
| Gene synonyms (mouse) | Kaiso |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | B |
| Motif | KAISO.H13RSNP.0.P.B |
| Gene (human) | ZBTB33 (GeneCards) |
| Gene synonyms (human) | KAISO, ZNF348 |
| Gene (mouse) | Zbtb33 |
| Gene synonyms (mouse) | Kaiso |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | B |
| Motif length | 10 |
| Consensus | bCGCGAGAnb |
| GC content | 62.9% |
| Information content (bits; total / per base) | 10.555 / 1.056 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| Previous names | KAISO.H12RSNP.0.P.B |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 15 (99) | 0.826 | 0.955 | 0.799 | 0.952 | 0.766 | 0.948 | 3.254 | 5.234 | 209.959 | 434.658 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 3.155 | 6.98 | 0.112 | 0.074 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Other with up to three adjacent zinc fingers {2.3.2} (TFClass) |
| TF subfamily | BTB-POZ {2.3.2.1} (TFClass) |
| TFClass ID | TFClass: 2.3.2.1.12 |
| HGNC | HGNC:16682 |
| MGI | MGI:1927290 |
| EntrezGene (human) | GeneID:10009 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:56805 (SSTAR profile) |
| UniProt ID (human) | KAISO_HUMAN |
| UniProt ID (mouse) | KAISO_MOUSE |
| UniProt AC (human) | Q86T24 (TFClass) |
| UniProt AC (mouse) | Q8BN78 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 15 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | KAISO.H13RSNP.0.P.B.pcm |
| PWM | KAISO.H13RSNP.0.P.B.pwm |
| PFM | KAISO.H13RSNP.0.P.B.pfm |
| Threshold to P-value map | KAISO.H13RSNP.0.P.B.thr |
| Motif in other formats | |
| JASPAR format | KAISO.H13RSNP.0.P.B_jaspar_format.txt |
| MEME format | KAISO.H13RSNP.0.P.B_meme_format.meme |
| Transfac format | KAISO.H13RSNP.0.P.B_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 73.0 | 241.0 | 125.0 | 561.0 |
| 02 | 27.0 | 886.0 | 41.0 | 46.0 |
| 03 | 78.0 | 22.0 | 874.0 | 26.0 |
| 04 | 41.0 | 868.0 | 74.0 | 17.0 |
| 05 | 40.0 | 26.0 | 932.0 | 2.0 |
| 06 | 875.0 | 22.0 | 94.0 | 9.0 |
| 07 | 16.0 | 8.0 | 950.0 | 26.0 |
| 08 | 925.0 | 17.0 | 47.0 | 11.0 |
| 09 | 286.0 | 162.0 | 363.0 | 189.0 |
| 10 | 88.0 | 364.0 | 174.0 | 374.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.073 | 0.241 | 0.125 | 0.561 |
| 02 | 0.027 | 0.886 | 0.041 | 0.046 |
| 03 | 0.078 | 0.022 | 0.874 | 0.026 |
| 04 | 0.041 | 0.868 | 0.074 | 0.017 |
| 05 | 0.04 | 0.026 | 0.932 | 0.002 |
| 06 | 0.875 | 0.022 | 0.094 | 0.009 |
| 07 | 0.016 | 0.008 | 0.95 | 0.026 |
| 08 | 0.925 | 0.017 | 0.047 | 0.011 |
| 09 | 0.286 | 0.162 | 0.363 | 0.189 |
| 10 | 0.088 | 0.364 | 0.174 | 0.374 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.215 | -0.036 | -0.686 | 0.804 |
| 02 | -2.171 | 1.26 | -1.774 | -1.663 |
| 03 | -1.15 | -2.362 | 1.247 | -2.206 |
| 04 | -1.774 | 1.24 | -1.201 | -2.598 |
| 05 | -1.797 | -2.206 | 1.311 | -4.213 |
| 06 | 1.248 | -2.362 | -0.967 | -3.156 |
| 07 | -2.653 | -3.253 | 1.33 | -2.206 |
| 08 | 1.303 | -2.598 | -1.642 | -2.985 |
| 09 | 0.134 | -0.43 | 0.371 | -0.278 |
| 10 | -1.032 | 0.374 | -0.359 | 0.401 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.552865 |
| 0.0005 | 5.46774 |
| 0.0001 | 7.236045 |