| Motif | KLF13.H13RSNP.0.PSM.A |
| Gene (human) | KLF13 (GeneCards) |
| Gene synonyms (human) | BTEB3, NSLP1 |
| Gene (mouse) | Klf13 |
| Gene synonyms (mouse) | Bteb3, Fklf2 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | KLF13.H13RSNP.0.PSM.A |
| Gene (human) | KLF13 (GeneCards) |
| Gene synonyms (human) | BTEB3, NSLP1 |
| Gene (mouse) | Klf13 |
| Gene synonyms (mouse) | Bteb3, Fklf2 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 17 |
| Consensus | nddRKGGGCGTGGYnnn |
| GC content | 69.95% |
| Information content (bits; total / per base) | 17.176 / 1.01 |
| Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9951 |
| Previous names | KLF13.H12RSNP.0.PSM.A |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (13) | 0.76 | 0.82 | 0.642 | 0.749 | 0.781 | 0.826 | 3.021 | 3.408 | 30.921 | 111.678 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 6 experiments | median | 0.994 | 0.988 | 0.989 | 0.982 | 0.966 | 0.956 |
| best | 0.996 | 0.992 | 0.996 | 0.992 | 0.992 | 0.987 | |
| Methyl HT-SELEX, 2 experiments | median | 0.994 | 0.988 | 0.989 | 0.982 | 0.971 | 0.961 |
| best | 0.994 | 0.989 | 0.99 | 0.983 | 0.975 | 0.965 | |
| Non-Methyl HT-SELEX, 4 experiments | median | 0.881 | 0.87 | 0.809 | 0.81 | 0.76 | 0.766 |
| best | 0.996 | 0.992 | 0.996 | 0.992 | 0.992 | 0.987 | |
| rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
|---|---|---|---|---|
| batch 1 | 0.982 | 0.701 | 0.935 | 0.534 |
| batch 2 | 0.876 | 0.522 | 0.9 | 0.718 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Three-zinc finger Kruppel-related {2.3.1} (TFClass) |
| TF subfamily | Kr-like {2.3.1.2} (TFClass) |
| TFClass ID | TFClass: 2.3.1.2.13 |
| HGNC | HGNC:13672 |
| MGI | MGI:1354948 |
| EntrezGene (human) | GeneID:51621 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:50794 (SSTAR profile) |
| UniProt ID (human) | KLF13_HUMAN |
| UniProt ID (mouse) | KLF13_MOUSE |
| UniProt AC (human) | Q9Y2Y9 (TFClass) |
| UniProt AC (mouse) | Q9JJZ6 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 4 |
| Methyl-HT-SELEX | 2 |
| Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | KLF13.H13RSNP.0.PSM.A.pcm |
| PWM | KLF13.H13RSNP.0.PSM.A.pwm |
| PFM | KLF13.H13RSNP.0.PSM.A.pfm |
| Threshold to P-value map | KLF13.H13RSNP.0.PSM.A.thr |
| Motif in other formats | |
| JASPAR format | KLF13.H13RSNP.0.PSM.A_jaspar_format.txt |
| MEME format | KLF13.H13RSNP.0.PSM.A_meme_format.meme |
| Transfac format | KLF13.H13RSNP.0.PSM.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2168.25 | 1579.25 | 3903.25 | 2300.25 |
| 02 | 2988.5 | 896.5 | 3946.5 | 2119.5 |
| 03 | 3451.0 | 814.0 | 4023.0 | 1663.0 |
| 04 | 2007.0 | 127.0 | 7346.0 | 471.0 |
| 05 | 818.0 | 26.0 | 6476.0 | 2631.0 |
| 06 | 607.0 | 6.0 | 9283.0 | 55.0 |
| 07 | 10.0 | 16.0 | 9913.0 | 12.0 |
| 08 | 18.0 | 3.0 | 9922.0 | 8.0 |
| 09 | 63.0 | 9719.0 | 29.0 | 140.0 |
| 10 | 11.0 | 3.0 | 9928.0 | 9.0 |
| 11 | 20.0 | 15.0 | 108.0 | 9808.0 |
| 12 | 74.0 | 14.0 | 9810.0 | 53.0 |
| 13 | 365.0 | 111.0 | 7903.0 | 1572.0 |
| 14 | 322.0 | 6912.0 | 712.0 | 2005.0 |
| 15 | 2508.0 | 1908.0 | 3431.0 | 2104.0 |
| 16 | 1953.75 | 1757.75 | 2609.75 | 3629.75 |
| 17 | 2057.5 | 1690.5 | 3392.5 | 2810.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.218 | 0.159 | 0.392 | 0.231 |
| 02 | 0.3 | 0.09 | 0.397 | 0.213 |
| 03 | 0.347 | 0.082 | 0.404 | 0.167 |
| 04 | 0.202 | 0.013 | 0.738 | 0.047 |
| 05 | 0.082 | 0.003 | 0.651 | 0.264 |
| 06 | 0.061 | 0.001 | 0.933 | 0.006 |
| 07 | 0.001 | 0.002 | 0.996 | 0.001 |
| 08 | 0.002 | 0.0 | 0.997 | 0.001 |
| 09 | 0.006 | 0.977 | 0.003 | 0.014 |
| 10 | 0.001 | 0.0 | 0.998 | 0.001 |
| 11 | 0.002 | 0.002 | 0.011 | 0.986 |
| 12 | 0.007 | 0.001 | 0.986 | 0.005 |
| 13 | 0.037 | 0.011 | 0.794 | 0.158 |
| 14 | 0.032 | 0.695 | 0.072 | 0.201 |
| 15 | 0.252 | 0.192 | 0.345 | 0.211 |
| 16 | 0.196 | 0.177 | 0.262 | 0.365 |
| 17 | 0.207 | 0.17 | 0.341 | 0.282 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.137 | -0.454 | 0.45 | -0.078 |
| 02 | 0.183 | -1.019 | 0.461 | -0.16 |
| 03 | 0.327 | -1.115 | 0.48 | -0.402 |
| 04 | -0.215 | -2.958 | 1.082 | -1.66 |
| 05 | -1.11 | -4.477 | 0.956 | 0.056 |
| 06 | -1.408 | -5.704 | 1.316 | -3.772 |
| 07 | -5.31 | -4.913 | 1.382 | -5.16 |
| 08 | -4.809 | -6.152 | 1.383 | -5.488 |
| 09 | -3.641 | 1.362 | -4.376 | -2.862 |
| 10 | -5.232 | -6.152 | 1.383 | -5.395 |
| 11 | -4.715 | -4.969 | -3.117 | 1.371 |
| 12 | -3.485 | -5.029 | 1.371 | -3.807 |
| 13 | -1.914 | -3.09 | 1.155 | -0.458 |
| 14 | -2.038 | 1.021 | -1.249 | -0.216 |
| 15 | 0.008 | -0.265 | 0.321 | -0.167 |
| 16 | -0.241 | -0.347 | 0.048 | 0.377 |
| 17 | -0.19 | -0.386 | 0.31 | 0.122 |
| P-value | Threshold |
|---|---|
| 0.001 | 0.19096 |
| 0.0005 | 1.81526 |
| 0.0001 | 5.17416 |