Motif | MAX.H13RSNP.0.PS.A |
Gene (human) | MAX (GeneCards) |
Gene synonyms (human) | BHLHD4 |
Gene (mouse) | Max |
Gene synonyms (mouse) | Myn |
LOGO | ![]() |
LOGO (reverse complement) | ![]() |
Motif subtype | 0 |
Quality | A |
Motif | MAX.H13RSNP.0.PS.A |
Gene (human) | MAX (GeneCards) |
Gene synonyms (human) | BHLHD4 |
Gene (mouse) | Max |
Gene synonyms (mouse) | Myn |
LOGO | ![]() |
LOGO (reverse complement) | ![]() |
Motif subtype | 0 |
Quality | A |
Motif length | 10 |
Consensus | vCACGTGGbb |
GC content | 71.52% |
Information content (bits; total / per base) | 12.007 / 1.201 |
Data sources | ChIP-Seq + HT-SELEX |
Aligned words | 1000 |
Previous names | MAX.H12RSNP.0.PS.A |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 39 (261) | 0.89 | 0.964 | 0.803 | 0.917 | 0.823 | 0.923 | 2.777 | 3.452 | 274.699 | 643.602 |
Mouse | 6 (39) | 0.875 | 0.932 | 0.779 | 0.872 | 0.812 | 0.874 | 2.598 | 3.099 | 219.456 | 500.62 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 6 experiments | median | 0.989 | 0.98 | 0.984 | 0.973 | 0.96 | 0.95 |
best | 0.997 | 0.995 | 0.995 | 0.992 | 0.991 | 0.984 | |
Methyl HT-SELEX, 1 experiments | median | 0.934 | 0.887 | 0.922 | 0.873 | 0.887 | 0.84 |
best | 0.934 | 0.887 | 0.922 | 0.873 | 0.887 | 0.84 | |
Non-Methyl HT-SELEX, 5 experiments | median | 0.994 | 0.989 | 0.986 | 0.979 | 0.962 | 0.956 |
best | 0.997 | 0.995 | 0.995 | 0.992 | 0.991 | 0.984 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 31.332 | 25.123 | 0.283 | 0.252 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
TF family | bHLH-ZIP {1.2.6} (TFClass) |
TF subfamily | MYC {1.2.6.5} (TFClass) |
TFClass ID | TFClass: 1.2.6.5.5 |
HGNC | HGNC:6913 |
MGI | MGI:96921 |
EntrezGene (human) | GeneID:4149 (SSTAR profile) |
EntrezGene (mouse) | GeneID:17187 (SSTAR profile) |
UniProt ID (human) | MAX_HUMAN |
UniProt ID (mouse) | MAX_MOUSE |
UniProt AC (human) | P61244 (TFClass) |
UniProt AC (mouse) | P28574 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 39 human, 6 mouse |
HT-SELEX | 5 |
Methyl-HT-SELEX | 1 |
Genomic HT-SELEX | 0 overall: 0 Lysate, 0 IVT, 0 GFPIVT |
SMiLE-Seq | 0 |
PBM | 0 |
PCM | MAX.H13RSNP.0.PS.A.pcm |
PWM | MAX.H13RSNP.0.PS.A.pwm |
PFM | MAX.H13RSNP.0.PS.A.pfm |
Threshold to P-value map | MAX.H13RSNP.0.PS.A.thr |
Motif in other formats | |
JASPAR format | MAX.H13RSNP.0.PS.A_jaspar_format.txt |
MEME format | MAX.H13RSNP.0.PS.A_meme_format.meme |
Transfac format | MAX.H13RSNP.0.PS.A_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 190.0 | 220.0 | 509.0 | 81.0 |
02 | 8.0 | 991.0 | 1.0 | 0.0 |
03 | 987.0 | 2.0 | 7.0 | 4.0 |
04 | 6.0 | 953.0 | 18.0 | 23.0 |
05 | 48.0 | 7.0 | 945.0 | 0.0 |
06 | 59.0 | 124.0 | 2.0 | 815.0 |
07 | 0.0 | 2.0 | 992.0 | 6.0 |
08 | 53.0 | 133.0 | 802.0 | 12.0 |
09 | 63.0 | 452.0 | 243.0 | 242.0 |
10 | 82.0 | 485.0 | 264.0 | 169.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.19 | 0.22 | 0.509 | 0.081 |
02 | 0.008 | 0.991 | 0.001 | 0.0 |
03 | 0.987 | 0.002 | 0.007 | 0.004 |
04 | 0.006 | 0.953 | 0.018 | 0.023 |
05 | 0.048 | 0.007 | 0.945 | 0.0 |
06 | 0.059 | 0.124 | 0.002 | 0.815 |
07 | 0.0 | 0.002 | 0.992 | 0.006 |
08 | 0.053 | 0.133 | 0.802 | 0.012 |
09 | 0.063 | 0.452 | 0.243 | 0.242 |
10 | 0.082 | 0.485 | 0.264 | 0.169 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.272 | -0.127 | 0.707 | -1.113 |
02 | -3.253 | 1.372 | -4.525 | -4.982 |
03 | 1.368 | -4.213 | -3.362 | -3.783 |
04 | -3.484 | 1.333 | -2.546 | -2.32 |
05 | -1.622 | -3.362 | 1.325 | -4.982 |
06 | -1.422 | -0.694 | -4.213 | 1.177 |
07 | -4.982 | -4.213 | 1.373 | -3.484 |
08 | -1.526 | -0.625 | 1.161 | -2.909 |
09 | -1.358 | 0.589 | -0.028 | -0.032 |
10 | -1.101 | 0.659 | 0.054 | -0.388 |
P-value | Threshold |
---|---|
0.001 | 3.944015 |
0.0005 | 5.030535 |
0.0001 | 7.428515 |