MAZ.H13RSNP.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MAZ.H13RSNP.1.P.B
Gene (human)	MAZ (GeneCards)
Gene synonyms (human)	ZNF801
Gene (mouse)	Maz
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	23
Consensus	dRRGGGhGGRGvnRRvvvvvvdd
GC content	68.33%
Information content (bits; total / per base)	14.318 / 0.623
Data sources	ChIP-Seq
Aligned words	992
Previous names	MAZ.H12RSNP.1.P.B

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (33)	0.747	0.807	0.548	0.656	0.838	0.916	3.346	4.467	15.569	75.854
Mouse	2 (12)	0.782	0.831	0.593	0.668	0.824	0.899	3.55	4.505	46.362	60.959

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.768	1.141	0.047	0.019

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.1
HGNC	HGNC:6914
MGI	MGI:1338823
EntrezGene (human)	GeneID:4150 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	MAZ_HUMAN
UniProt ID (mouse)	MAZ_MOUSE
UniProt AC (human)	P56270 (TFClass)
UniProt AC (mouse)	P56671 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	MAZ.H13RSNP.1.P.B.pcm
PWM	MAZ.H13RSNP.1.P.B.pwm
PFM	MAZ.H13RSNP.1.P.B.pfm
Threshold to P-value map	MAZ.H13RSNP.1.P.B.thr
Motif in other formats
JASPAR format	MAZ.H13RSNP.1.P.B_jaspar_format.txt
MEME format	MAZ.H13RSNP.1.P.B_meme_format.meme
Transfac format	MAZ.H13RSNP.1.P.B_transfac_format.txt
Homer format	MAZ.H13RSNP.1.P.B_homer_format_0.001.txt MAZ.H13RSNP.1.P.B_homer_format_0.0005.txt MAZ.H13RSNP.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	272.0	116.0	432.0	172.0
02	238.0	77.0	590.0	87.0
03	298.0	53.0	571.0	70.0
04	216.0	8.0	751.0	17.0
05	66.0	2.0	908.0	16.0
06	10.0	41.0	934.0	7.0
07	506.0	234.0	49.0	203.0
08	72.0	6.0	877.0	37.0
09	53.0	11.0	912.0	16.0
10	215.0	13.0	739.0	25.0
11	147.0	18.0	813.0	14.0
12	142.0	179.0	586.0	85.0
13	329.0	200.0	285.0	178.0
14	248.0	77.0	567.0	100.0
15	297.0	68.0	555.0	72.0
16	283.0	106.0	513.0	90.0
17	312.0	115.0	481.0	84.0
18	269.0	95.0	535.0	93.0
19	259.0	169.0	470.0	94.0
20	264.0	137.0	479.0	112.0
21	209.0	133.0	526.0	124.0
22	292.0	120.0	459.0	121.0
23	314.0	82.0	499.0	97.0

PFM

	A	C	G	T
01	0.274	0.117	0.435	0.173
02	0.24	0.078	0.595	0.088
03	0.3	0.053	0.576	0.071
04	0.218	0.008	0.757	0.017
05	0.067	0.002	0.915	0.016
06	0.01	0.041	0.942	0.007
07	0.51	0.236	0.049	0.205
08	0.073	0.006	0.884	0.037
09	0.053	0.011	0.919	0.016
10	0.217	0.013	0.745	0.025
11	0.148	0.018	0.82	0.014
12	0.143	0.18	0.591	0.086
13	0.332	0.202	0.287	0.179
14	0.25	0.078	0.572	0.101
15	0.299	0.069	0.559	0.073
16	0.285	0.107	0.517	0.091
17	0.315	0.116	0.485	0.085
18	0.271	0.096	0.539	0.094
19	0.261	0.17	0.474	0.095
20	0.266	0.138	0.483	0.113
21	0.211	0.134	0.53	0.125
22	0.294	0.121	0.463	0.122
23	0.317	0.083	0.503	0.098

PWM

	A	C	G	T
01	0.092	-0.752	0.552	-0.363
02	-0.041	-1.154	0.863	-1.035
03	0.183	-1.518	0.83	-1.248
04	-0.137	-3.246	1.103	-2.591
05	-1.305	-4.205	1.293	-2.645
06	-3.059	-1.766	1.321	-3.354
07	0.71	-0.058	-1.594	-0.199
08	-1.22	-3.476	1.258	-1.864
09	-1.518	-2.977	1.297	-2.645
10	-0.142	-2.831	1.087	-2.235
11	-0.518	-2.538	1.182	-2.765
12	-0.552	-0.323	0.856	-1.058
13	0.281	-0.213	0.138	-0.329
14	0.0	-1.154	0.823	-0.898
15	0.179	-1.276	0.802	-1.22
16	0.131	-0.841	0.723	-1.002
17	0.228	-0.761	0.659	-1.069
18	0.081	-0.948	0.765	-0.969
19	0.043	-0.38	0.636	-0.959
20	0.062	-0.588	0.655	-0.787
21	-0.17	-0.617	0.748	-0.686
22	0.162	-0.719	0.612	-0.71
23	0.235	-1.093	0.696	-0.928

Standard thresholds

P-value	Threshold
0.001	3.54631
0.0005	4.58106
0.0001	6.75291