MBD3.H13INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	MBD3.H13INVITRO.0.P.D
Gene (human)	MBD3 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Mbd3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	GRMRMRSRRvndRvvRRvRnd
GC content	65.9%
Information content (bits; total / per base)	11.364 / 0.541
Data sources	ChIP-Seq
Aligned words	254
Previous names

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	Centrality, median	Centrality, best
Overall	2 (2)	0.657	0.662	0.439	0.444	0.704	0.743	0.0	0.0

TF superclass	Yet undefined DNA-binding domains {0} (TFClass)
TF class	Uncharacterized {0.0} (TFClass)
TF family	MBD factors {0.0.0} (TFClass)
TF subfamily	CpG-binding {0.0.0.0} (TFClass)
TFClass ID	TFClass: 0.0.0.0.257
HGNC	HGNC:6918
MGI	MGI:1333812
EntrezGene (human)	GeneID:53615 (SSTAR profile)
EntrezGene (mouse)	GeneID:17192 (SSTAR profile)
UniProt ID (human)	MBD3_HUMAN
UniProt ID (mouse)	MBD3_MOUSE
UniProt AC (human)	O95983 (TFClass)
UniProt AC (mouse)	Q9Z2D8 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
Genomic HT-SELEX	0 overall: 0 Lysate, 0 IVT, 0 GFPIVT
SMiLE-Seq	0
PBM	0

PCM	MBD3.H13INVITRO.0.P.D.pcm
PWM	MBD3.H13INVITRO.0.P.D.pwm
PFM	MBD3.H13INVITRO.0.P.D.pfm
Threshold to P-value map	MBD3.H13INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	MBD3.H13INVITRO.0.P.D_jaspar_format.txt
MEME format	MBD3.H13INVITRO.0.P.D_meme_format.meme
Transfac format	MBD3.H13INVITRO.0.P.D_transfac_format.txt
Homer format	MBD3.H13INVITRO.0.P.D_homer_format_0.001.txt MBD3.H13INVITRO.0.P.D_homer_format_0.0005.txt MBD3.H13INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	40.0	5.0	204.0	5.0
02	40.0	29.0	185.0	0.0
03	182.0	55.0	8.0	9.0
04	29.0	9.0	198.0	18.0
05	42.0	177.0	18.0	17.0
06	65.0	19.0	151.0	19.0
07	31.0	116.0	100.0	7.0
08	139.0	14.0	96.0	5.0
09	22.0	13.0	203.0	16.0
10	63.0	86.0	99.0	6.0
11	61.0	56.0	84.0	53.0
12	88.0	18.0	111.0	37.0
13	34.0	29.0	184.0	7.0
14	65.0	85.0	95.0	9.0
15	99.0	25.0	109.0	21.0
16	68.0	54.0	130.0	2.0
17	81.0	33.0	134.0	6.0
18	101.0	65.0	77.0	11.0
19	103.0	17.0	123.0	11.0
20	85.0	81.0	85.0	3.0
21	88.0	14.0	121.0	31.0

PFM

	A	C	G	T
01	0.157	0.02	0.803	0.02
02	0.157	0.114	0.728	0.0
03	0.717	0.217	0.031	0.035
04	0.114	0.035	0.78	0.071
05	0.165	0.697	0.071	0.067
06	0.256	0.075	0.594	0.075
07	0.122	0.457	0.394	0.028
08	0.547	0.055	0.378	0.02
09	0.087	0.051	0.799	0.063
10	0.248	0.339	0.39	0.024
11	0.24	0.22	0.331	0.209
12	0.346	0.071	0.437	0.146
13	0.134	0.114	0.724	0.028
14	0.256	0.335	0.374	0.035
15	0.39	0.098	0.429	0.083
16	0.268	0.213	0.512	0.008
17	0.319	0.13	0.528	0.024
18	0.398	0.256	0.303	0.043
19	0.406	0.067	0.484	0.043
20	0.335	0.319	0.335	0.012
21	0.346	0.055	0.476	0.122

PWM

	A	C	G	T
01	-0.45	-2.319	1.152	-2.319
02	-0.45	-0.759	1.055	-3.847
03	1.039	-0.14	-1.934	-1.832
04	-0.759	-1.832	1.123	-1.208
05	-0.403	1.011	-1.208	-1.261
06	0.023	-1.158	0.854	-1.158
07	-0.695	0.593	0.446	-2.046
08	0.772	-1.439	0.406	-2.319
09	-1.021	-1.506	1.147	-1.317
10	-0.008	0.298	0.436	-2.173
11	-0.039	-0.123	0.275	-0.177
12	0.32	-1.208	0.549	-0.525
13	-0.606	-0.759	1.05	-2.046
14	0.023	0.286	0.396	-1.832
15	0.436	-0.9	0.531	-1.064
16	0.067	-0.158	0.706	-2.953
17	0.239	-0.635	0.736	-2.173
18	0.456	0.023	0.189	-1.656
19	0.475	-1.261	0.651	-1.656
20	0.286	0.239	0.286	-2.695
21	0.32	-1.439	0.635	-0.695

Standard thresholds

P-value	Threshold
0.001	4.51086
0.0005	5.35071
0.0001	7.10871