| Motif | MGA.H13INVIVO.0.PSG.A |
| Gene (human) | MGA (GeneCards) |
| Gene synonyms (human) | KIAA0518, MAD5 |
| Gene (mouse) | Mga |
| Gene synonyms (mouse) | Kiaa4252 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | A |
| Motif | MGA.H13INVIVO.0.PSG.A |
| Gene (human) | MGA (GeneCards) |
| Gene synonyms (human) | KIAA0518, MAD5 |
| Gene (mouse) | Mga |
| Gene synonyms (mouse) | Kiaa4252 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | A |
| Motif length | 9 |
| Consensus | AGGTGTGAR |
| GC content | 48.29% |
| Information content (bits; total / per base) | 13.515 / 1.502 |
| Data sources | ChIP-Seq + HT-SELEX + Genomic HT-SELEX |
| Aligned words | 500 |
| Previous names |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|
| Overall | 1 (1) | 0.55 | 0.55 | 0.396 | 0.396 | 0.663 | 0.663 | 20.569 | 20.569 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Lysate, 2 experiments | median | 1.0 | 1.0 | 0.998 | 0.998 | 0.991 | 0.988 |
| best | 1.0 | 1.0 | 0.998 | 0.998 | 0.994 | 0.992 | |
| Genomic HT-SELEX benchmarking | Centrality | pseudo-auROC | auROC | auPR | |
|---|---|---|---|---|---|
| Lysate, 2 experiments | median | 304.219 | 0.919 | 0.913 | 0.785 |
| best | 636.538 | 0.937 | 0.924 | 0.819 | |
| TF superclass | Basic domains {1} (TFClass) |
| TF class | Basic helix-loop-helix factors (bHLH) {1.2} (TFClass) |
| TF family | bHLH-ZIP {1.2.6} (TFClass) |
| TF subfamily | MAD {1.2.6.7} (TFClass) |
| TFClass ID | TFClass: 1.2.6.7.4 |
| HGNC | HGNC:14010 |
| MGI | MGI:1352483 |
| EntrezGene (human) | GeneID:23269 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:29808 (SSTAR profile) |
| UniProt ID (human) | MGAP_HUMAN |
| UniProt ID (mouse) | MGAP_MOUSE |
| UniProt AC (human) | Q8IWI9 (TFClass) |
| UniProt AC (mouse) | A2AWL7 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 2 overall: 2 Lysate, 0 IVT, 0 GFPIVT |
| Genomic HT-SELEX | 2 overall: 2 Lysate, 0 IVT, 0 GFPIVT |
| SMiLE-Seq | 0 |
| PBM | 0 |
| PCM | MGA.H13INVIVO.0.PSG.A.pcm |
| PWM | MGA.H13INVIVO.0.PSG.A.pwm |
| PFM | MGA.H13INVIVO.0.PSG.A.pfm |
| Threshold to P-value map | MGA.H13INVIVO.0.PSG.A.thr |
| Motif in other formats | |
| JASPAR format | MGA.H13INVIVO.0.PSG.A_jaspar_format.txt |
| MEME format | MGA.H13INVIVO.0.PSG.A_meme_format.meme |
| Transfac format | MGA.H13INVIVO.0.PSG.A_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 396.0 | 3.0 | 73.0 | 28.0 |
| 02 | 26.0 | 15.0 | 423.0 | 36.0 |
| 03 | 0.0 | 7.0 | 493.0 | 0.0 |
| 04 | 0.0 | 8.0 | 1.0 | 491.0 |
| 05 | 0.0 | 0.0 | 500.0 | 0.0 |
| 06 | 29.0 | 3.0 | 3.0 | 465.0 |
| 07 | 0.0 | 9.0 | 477.0 | 14.0 |
| 08 | 479.0 | 0.0 | 20.0 | 1.0 |
| 09 | 313.0 | 22.0 | 116.0 | 49.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.792 | 0.006 | 0.146 | 0.056 |
| 02 | 0.052 | 0.03 | 0.846 | 0.072 |
| 03 | 0.0 | 0.014 | 0.986 | 0.0 |
| 04 | 0.0 | 0.016 | 0.002 | 0.982 |
| 05 | 0.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.058 | 0.006 | 0.006 | 0.93 |
| 07 | 0.0 | 0.018 | 0.954 | 0.028 |
| 08 | 0.958 | 0.0 | 0.04 | 0.002 |
| 09 | 0.626 | 0.044 | 0.232 | 0.098 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.145 | -3.325 | -0.529 | -1.454 |
| 02 | -1.525 | -2.034 | 1.21 | -1.215 |
| 03 | -4.4 | -2.694 | 1.363 | -4.4 |
| 04 | -4.4 | -2.584 | -3.903 | 1.359 |
| 05 | -4.4 | -4.4 | 1.377 | -4.4 |
| 06 | -1.421 | -3.325 | -3.325 | 1.305 |
| 07 | -4.4 | -2.484 | 1.33 | -2.096 |
| 08 | 1.334 | -4.4 | -1.77 | -3.903 |
| 09 | 0.91 | -1.681 | -0.074 | -0.918 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.3606 |
| 0.0005 | 4.601915 |
| 0.0001 | 6.936955 |