MotifMSANTD1.H13INVIVO.0.PSGIB.A
Gene (human)MSANTD1
(GeneCards)
Gene synonyms (human)C4orf44
Gene (mouse)Msantd1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length10
ConsensusvhYTTAAGYv
GC content31.9%
Information content (bits; total / per base)10.947 / 1.095
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words1000
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.877 0.879 0.785 0.788 0.757 0.765 146.406 167.638

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 1.0 0.999 0.998 0.998 0.809 0.849
best 1.0 1.0 0.999 0.998 0.873 0.898
Lysate, 1 experiments median 1.0 1.0 0.998 0.998 0.809 0.849
best 1.0 1.0 0.998 0.998 0.809 0.849
IVT, 1 experiments median 0.998 0.996 0.965 0.965 0.769 0.804
best 0.998 0.996 0.965 0.965 0.769 0.804
GFPIVT, 1 experiments median 1.0 0.999 0.999 0.998 0.873 0.898
best 1.0 0.999 0.999 0.998 0.873 0.898

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 264.494 0.922 0.952 0.943
best 708.229 0.981 0.988 0.974
Lysate, 1 experiments median 298.31 0.913 0.936 0.934
best 708.229 0.931 0.968 0.951
IVT, 1 experiments median 230.678 0.981 0.988 0.974
best 230.678 0.981 0.988 0.974

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.994 0.99 0.97 0.965 0.763 0.803
best 0.994 0.99 0.97 0.965 0.763 0.803

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 4 experiments median 0.714 0.067 0.668 0.035
best 0.856 0.111 0.695 0.045
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyMyb/SANT domain {3.5.1} (TFClass)
TF subfamilyOther Myb-like {3.5.1.0} (TFClass)
TFClass IDTFClass: 3.5.1.0.1
HGNCHGNC:33741
MGIMGI:2684990
EntrezGene (human)GeneID:345222
(SSTAR profile)
EntrezGene (mouse)GeneID:403174
(SSTAR profile)
UniProt ID (human)MSD1_HUMAN
UniProt ID (mouse)MSD1_MOUSE
UniProt AC (human)Q6ZTZ1
(TFClass)
UniProt AC (mouse)Q8BIL2
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 1 IVT, 0 GFPIVT
SMiLE-Seq 1
PBM 4
PCM
ACGT
01341.0441.0154.064.0
02251.099.095.0555.0
0350.0533.073.0344.0
040.027.03.0970.0
059.013.08.0970.0
06978.08.08.06.0
07992.00.06.02.0
0822.018.0937.023.0
0964.0142.039.0755.0
10257.0194.0392.0157.0
PFM
ACGT
010.3410.4410.1540.064
020.2510.0990.0950.555
030.050.5330.0730.344
040.00.0270.0030.97
050.0090.0130.0080.97
060.9780.0080.0080.006
070.9920.00.0060.002
080.0220.0180.9370.023
090.0640.1420.0390.755
100.2570.1940.3920.157
PWM
ACGT
010.3090.565-0.48-1.343
020.004-0.916-0.9560.794
03-1.5820.753-1.2150.317
04-4.982-2.171-3.9751.351
05-3.156-2.839-3.2531.351
061.359-3.253-3.253-3.484
071.373-4.982-3.484-4.213
08-2.362-2.5461.316-2.32
09-1.343-0.56-1.8211.101
100.027-0.2520.447-0.461
Standard thresholds
P-value Threshold
0.001 4.398635
0.0005 5.421955
0.0001 7.54818