MotifMSANTD1.H13RSNP.0.PSGIB.D
Gene (human)MSANTD1
(GeneCards)
Gene synonyms (human)C4orf44
Gene (mouse)Msantd1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length10
ConsensusdSTTAAGWKb
GC content40.71%
Information content (bits; total / per base)10.784 / 1.078
Data sourcesChIP-Seq + HT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words3936
Previous names

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best Centrality, median Centrality, best
Overall 2 (2) 0.867 0.868 0.782 0.79 0.736 0.739 115.195 121.77

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 3 experiments median 1.0 1.0 0.999 0.998 0.835 0.863
best 1.0 1.0 0.999 0.999 0.894 0.911
Lysate, 1 experiments median 1.0 1.0 0.999 0.998 0.835 0.863
best 1.0 1.0 0.999 0.998 0.835 0.863
IVT, 1 experiments median 0.999 0.999 0.968 0.969 0.778 0.811
best 0.999 0.999 0.968 0.969 0.778 0.811
GFPIVT, 1 experiments median 1.0 1.0 0.999 0.999 0.894 0.911
best 1.0 1.0 0.999 0.999 0.894 0.911

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 269.212 0.928 0.961 0.956
best 722.319 0.993 0.996 0.996
Lysate, 1 experiments median 303.538 0.921 0.948 0.946
best 722.319 0.935 0.974 0.965
IVT, 1 experiments median 234.886 0.993 0.996 0.996
best 234.886 0.993 0.996 0.996

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.998 0.998 0.975 0.972 0.802 0.828
best 0.998 0.998 0.975 0.972 0.802 0.828

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 4 experiments median 0.67 0.119 0.609 0.064
best 0.782 0.181 0.633 0.095
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyMyb/SANT domain {3.5.1} (TFClass)
TF subfamilyOther Myb-like {3.5.1.0} (TFClass)
TFClass IDTFClass: 3.5.1.0.1
HGNCHGNC:33741
MGIMGI:2684990
EntrezGene (human)GeneID:345222
(SSTAR profile)
EntrezGene (mouse)GeneID:403174
(SSTAR profile)
UniProt ID (human)MSD1_HUMAN
UniProt ID (mouse)MSD1_MOUSE
UniProt AC (human)Q6ZTZ1
(TFClass)
UniProt AC (mouse)Q8BIL2
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 0 mouse
HT-SELEX 3 overall: 1 Lysate, 1 IVT, 1 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 1 IVT, 0 GFPIVT
SMiLE-Seq 1
PBM 4
PCM
ACGT
011272.0539.01354.0771.0
02271.252747.25533.25384.25
032.0167.0221.03546.0
041.077.0108.03750.0
053936.00.00.00.0
063641.087.094.0114.0
070.00.03936.00.0
08481.0276.0190.02989.0
09313.0547.02509.0567.0
10598.01397.01239.0702.0
PFM
ACGT
010.3230.1370.3440.196
020.0690.6980.1350.098
030.0010.0420.0560.901
040.00.020.0270.953
051.00.00.00.0
060.9250.0220.0240.029
070.00.01.00.0
080.1220.070.0480.759
090.080.1390.6370.144
100.1520.3550.3150.178
PWM
ACGT
010.256-0.60.319-0.243
02-1.2831.025-0.611-0.937
03-5.49-1.763-1.4861.28
04-5.772-2.523-2.1931.336
051.385-6.166-6.166-6.166
061.307-2.404-2.329-2.14
07-6.166-6.1661.385-6.166
08-0.714-1.266-1.6361.11
09-1.141-0.5860.935-0.55
10-0.4970.350.23-0.337
Standard thresholds
P-value Threshold
0.001 4.5725
0.0005 5.557385
0.0001 7.49924