MotifMSANTD4.H13INVITRO.0.SGIB.A
Gene (human)MSANTD4
(GeneCards)
Gene synonyms (human)KIAA1826
Gene (mouse)Msantd4
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length15
ConsensusnvbTTACTACWhvnh
GC content41.41%
Information content (bits; total / per base)13.834 / 0.922
Data sourcesHT-SELEX + Genomic HT-SELEX + SMiLe-Seq + PBM
Aligned words1545
Previous names

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
overall, 2 experiments median 0.99 0.984 0.978 0.968 0.954 0.937
best 0.992 0.987 0.98 0.97 0.954 0.938
Lysate, 1 experiments median 0.989 0.982 0.977 0.965 0.953 0.935
best 0.989 0.982 0.977 0.965 0.953 0.935
GFPIVT, 1 experiments median 0.992 0.987 0.98 0.97 0.954 0.938
best 0.992 0.987 0.98 0.97 0.954 0.938

Genomic HT-SELEX benchmarking Centrality pseudo-auROC auROC auPR
overall, 2 experiments median 268.208 0.781 0.845 0.77
best 403.143 0.816 0.86 0.783
Lysate, 1 experiments median 321.854 0.799 0.845 0.773
best 403.143 0.816 0.86 0.783
GFPIVT, 1 experiments median 35.344 0.777 0.826 0.726
best 55.102 0.781 0.852 0.77

SMiLE-Seq benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 1 experiments median 0.589 0.558 0.573 0.547 0.543 0.532
best 0.589 0.558 0.573 0.547 0.543 0.532

PBM benchmarking auROC, QNZS auPR, QNZS auROC, SD auPR, SD
Overall, 4 experiments median 0.919 0.124 0.861 0.11
best 0.936 0.143 0.875 0.136
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyMyb/SANT domain {3.5.1} (TFClass)
TF subfamilyOther Myb-like {3.5.1.0} (TFClass)
TFClass IDTFClass: 3.5.1.0.4
HGNCHGNC:29383
MGIMGI:1925350
EntrezGene (human)GeneID:84437
(SSTAR profile)
EntrezGene (mouse)GeneID:78100
(SSTAR profile)
UniProt ID (human)MSD4_HUMAN
UniProt ID (mouse)MSD4_MOUSE
UniProt AC (human)Q8NCY6
(TFClass)
UniProt AC (mouse)Q91YU3
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
Genomic HT-SELEX 2 overall: 1 Lysate, 0 IVT, 1 GFPIVT
SMiLE-Seq 1
PBM 4
PCM
ACGT
01586.0328.0277.0354.0
02878.75377.75158.75129.75
03163.0629.0543.0210.0
041.0305.02.01237.0
050.00.00.01545.0
061545.00.00.00.0
070.01545.00.00.0
080.00.00.01545.0
091126.0419.00.00.0
10221.01320.01.03.0
11388.056.0224.0877.0
12530.0710.0114.0191.0
13256.0620.0636.033.0
14203.5420.5383.5537.5
15591.5368.5158.5426.5
PFM
ACGT
010.3790.2120.1790.229
020.5690.2440.1030.084
030.1060.4070.3510.136
040.0010.1970.0010.801
050.00.00.01.0
061.00.00.00.0
070.01.00.00.0
080.00.00.01.0
090.7290.2710.00.0
100.1430.8540.0010.002
110.2510.0360.1450.568
120.3430.460.0740.124
130.1660.4010.4120.021
140.1320.2720.2480.348
150.3830.2390.1030.276
PWM
ACGT
010.415-0.163-0.331-0.087
020.819-0.022-0.882-1.082
03-0.8560.4860.339-0.605
04-4.919-0.235-4.6171.161
05-5.354-5.354-5.3541.383
061.383-5.354-5.354-5.354
07-5.3541.383-5.354-5.354
08-5.354-5.354-5.3541.383
091.0670.081-5.354-5.354
10-0.5551.226-4.919-4.385
110.004-1.904-0.5410.817
120.3150.607-1.209-0.699
13-0.4090.4710.497-2.411
14-0.6370.085-0.0070.329
150.425-0.047-0.8840.099
Standard thresholds
P-value Threshold
0.001 2.13876
0.0005 3.54031
0.0001 7.17456